;ID ATCOPIA92_I DNA ; ATH ; 4537 BP ;XX ;DE Internal region of the ATCOPIA92 copia-like LTR-retrotransposon. ;XX ;AC AF262038 ;XX ;DT 30-NOV-2001 (Rel. 6.3, Created) ;DT 30-NOV-2001 (Rel. 6.3, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW copia-like polyprotein; reverse transcriptase; the ATCOPIA92 ;KW family; ATCOPIA92LTR; ATCOPIA92_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4537) ;RA Kapitonov,V.V. and Jurka,J. ;RT Internal portion of the ATCOPIA92 copia-like LTR-retrotransposon. ;RL Repbase Reports 1:(3) p. 28 (2001) ;XX ;CC ATCOPIA92_I is an internal region of the ATCOPIA92 copia-like ;CC endogenous retrovirus flanked by the 95% identical ATCOPIA92LTR ;CC long terminal repeats and a 5-bp target-site duplication (GAATA). ;CC ATCOPIA92 forms a separate family of copia-like retroviruses ;CC present in the A. thaliana genome since members of other families ;CC are less than 75% identical to ATCOPIA92_I. ;CC ATCOPIA92_I encodes remnants of the ATCOPIA92p copia-like ;CC polyprotein. The ORF which encodes ATCOPIA92p is damaged by several ;CC false frame shifts and stop codons. ;XX ;DR Positions 28125 23138 Accession No AF262038 GenBank (rel. 124.0) ;XX ;SQ Sequence 4537 BP; 1283 A; 1258 C; 762 G; 1234 T; 0 other; ATCOPIA92_I tggtatcagagcaataagctcctaagacctaaattttttcctctcttttttctctcacgccgtcaccatg tcttgagacaacaccagcgctgtcaactcaaatgttgttcccaacatcaacatgtcgaacatctcaaagc tacaacacaaaactacctcatgtggaagctccaagttcatgctctccttgatgggtatgaacttgtcgat catttggatgaatccaaagaagttccgtttgaaaccatcacttttgggacaacaacctctcccaacccag aattcacgaaatggcgtcgccaagaccgactcatccacaatgcactcatcgggtcgatctcctcttcagt ccagccgattgttggtcgcaccaccactgctgctccgatctggaccaaactcgcctccacctacgccaat ccatccagaatccatattcgtgtcttgaaagaccaactcaagctgtacaccaagggcaccaagtccattg acgagtacatcgaagggatgacaatccgtctcgatcaattggctttccgtgacagtgaccttgaacatga tgatcaaatcgagcacatccttgaaggtctccctgaggagtacaagcttatcatcgatcaaattgcagcc aaagacaaaacaccacaaatcaatgaagtttaagaaaggctgctgaactacgaagccaagctccttgcta aaactcaggccgctccatctgtttttgctcttgtctctgccaacgttgctcaacacaacaactccggtaa ttaacacaacaaccactacaacaataccaacaagaagaacaacaacaacacaccatggactccgaaccaa taccaaaattgccaatactgcaacacacaaggtcatagtgctcgactatgtccccaaatccaatcgctgc aaacatccacgtccttaatggcttccactccgttccgcccttggcagccacgagctaacctcgttgtagg ctcaccgtacactaccaacaattggctcttcgatttcggagccactcatcatttgacatccgacctcaac aacctttcggtgcatcaaccatacaatggcggtgatgacgttcttattgctcatggttccggaatgaaca tctctcacacgggttccaattttcttcctaatcaaactcgctccttacttcttgataaaatattatgtgt tgatatacagaaaaatcttatttatgtgtttcgtttgtgtaacactaataaagtctccgtggaatttttt cccttcttcctttcaggtgaaggatctcagcacgggggtcccattactccaaggcagaactaggaatgag ttgtatgagtagcttgttacatcttctcaaccagtagcgatggtgtcttcttttggtccaaaagctagtc ttatcaattggcattcaagattggggcatccttcttcttctatttcgcaatctattatttccaaattttt gcttcctatttcatcttctccacaaaaacaaaaacaatattcttgttctgattgccttgttaataaaagc cacaaacttcaattgtctctcatcaccctcttgaatatgtctttactgatgtttggacttcacccattca ctctattgataaccacaaatattatcttttgttagtagaccactacactcgctacacctggttgtaccca cttgtccgcaaattcgatgtcaacgatatattcacagcgtttaaagcccttgttgagaataaatttcaat gtcgcattggcacgttgttctctaacaatgggggtaaatttgtggcattacggcaattcctcgccactca tgggatcactcatctcaccacaccaccacacatccctgaacacaacgggctaggggagcgcaaacaccgt catatcgtagagaccggcctcacactcatgtccaccgcatcggtaccgaaacagtactggacatatgctt tttcgacagttgtgtatttgaacaatagaatgcccacggcggttctatctatgcaatcaccgtttcacaa gctattcgagtcgccaccaaactatgagaagctccgtgtctttggttgtttgtgttttccttggctgaga ccttacacacaaaacaaacttgacgaccggtcacaacggtgtgtgtttcttggctactacacttcccaaa gtgcatatttatgtctccatctaccgacaaacagagtgtatttctcccgccacgttcaattcaatgaaga aatcttcccctttaagcagcccgagtctcatcattgcgaaaatgaaagtgtccaaccttcatcactctcc aacatttttcatctccgaccagcgaagatttcatcgtcgccgataactgttgtatcacttccgaccacca actctactgctcctcatgatcgcacttctagttcacgtgtggaagtcgatgatatctccaacactaatgt tggccaaattcaactaggcccaacattgacactaaattcggcccaaacccagcaacaccactcaactcat cttcccaatgctcaacatcgtgcaccaactacctcgttgttgtcgccttccattccacggactcgacgaa tgcaacggctccttcctcaacgccgccactgggaccccaagcttggatcttcacccctcttcaccacgat cgtcaaactctcaggtatcaaactctatcccttcttcatccttttgtttctccgagcccactgctcattc tcaaaatgggtcacaaacctcgacccaatcaccatcgtctccaattgagcccactgctccacgttaatat gagttgaatcctacaacttagcctcagccacaacaaacccaaccaccacaccaagccttgtacaataaac gacagaaccaaataatccagccaccagaaaatacccacaaaatgagaaccagggccaaaaacaatatcac caaacccatatagaaactcagtcttcttatcactgcaaatcaaaaatgacctaccgaacctactacgatc aaacaagcgttgaaagataaagattggagtcgggcatgttcgatagaatttgatgtacttatgggtaacc acacgtgggatctcgtacctcctgccgcaacacaaaatatagttggctgcaaatggttattcacaaccaa atacttttctaatggacttctagaacgctacaagtcgcgacttgttgctaagggttttcatcaacaatac gggaaagattatgccgaaaccttcagtcccgtcatcaaatcaaccacgatccgcctagttcttgacgttg ctacatccaaagattggccaataaaacaacttgatgtcaataacgcgtttcttcaaggcgaactcaccga ggaagggtacatgtcccaacctcccgactttgtagacaacaatagaccatcctatgtatgttgcttgaag aagcctatatacggcctcaaacaagctccccgagcttggtacatggcactcaagcaattcctcctccact cgggcttcacaaactcaatggttgatacgtcacttttcatcctcagttcgggaaacacaattacatatgt ccttgtgtatgctgatgatattctcgttacaggaaatgataacatgatggtggaacaagttttagcttct tttgcagatcgcttttctattaaagacccaacagatcttcactattttcttggcatcgaagttacacgct catctcgtggtcttcatctcatgcaaaggaaatatataattgatcttctcacaaagaacaacatgctcga tgtgaagccagtgtcaacctcgttacaaccagtccaaaactcacactcaccaccggagaaagactccgtg atgcatcgcaatatcgttctgttgtgggcagcctccattacctctccttcacaagaccagacattgccta tgcggttaacaggatttctcaattcgtccaacacccaacagacgcacattggcatgcagctaaacgagtt ctccgctatcttgccggcacatccacacatggtatccaactaaacaagtcttctccaataacacttcttg cattctctgatgcagattgggctggcgacacgaaagattatgtctcaactaatggctacttgatatatct cggtagaaatcctatatcttggtcatctaagaaacaacgaggtgtctcctgctcctcaactgaatttgaa tatcgagcagtggcgaacactgcatctgagtttcgctggctttgctcacttctatacgagatgaaggtcc ggttaccagctgccccggttatttattgcgacaatattggcgccacttatctctgcgcaaatccagtctt ctactctcgtacgaagcatatagctcttgattatcacttcgttcgcaatcatattcaagacggcattctt cgtgtttctcatgttttcactaatgatcaattggcggatacactcactaaacctctcccaagaacacaat ttcatcatgcttgtgtcaagattggagtcacacagtttcctccatcttgagggggtg1