;ID ATCOPIA8BI DNA ; ATH ; 4285 BP ;XX ;DE Internal region of ATCOPIA8B LTR-retrotransposon. ;XX ;AC AL030978 ;XX ;DT 12-APR-1999 (Rel. 3.2, Created) ;DT 12-APR-1999 (Rel. 3.2, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW ATCOPIA8BLTR; ATCOPIA8BI. ;XX ;OS thale cress ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4285) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (March 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA8B internal sequence is flanked by 98% identical LTRs. ;CC The retroelement has been found as a tandem-like cluster: ;CC AL030978 540 778 ATCOPIA8BLTR 1 239 d 0.98 ;CC AL030978 779 2972 ATCOPIA8BI 2097 4285 d 1.00 ;CC AL030978 2973 3372 ATCOPIA8BLTR 1 400 d 0.98 ;CC AL030978 3373 7657 ATCOPIA8BI 1 4285 d 1.00 ;CC AL030978 7658 8057 ATCOPIA8BLTR 1 400 d 1.00 ;CC Target site duplication, ACTAG, flanks the whole cluster. ;XX ;DR Positions 3373 7657 Accession No AL030978 GenBank (rel. 109.0) ;XX ;SQ Sequence 4285 BP; 1181 A; 1045 C; 836 G; 1223 T; 0 other; ATCOPIA8BI tggtatcagaactcatggaacatagatccatggaactttactctgttccttctttaaatatctcaaactg tgtcactgttactctcacgggaaagaactacattctctggaaatctcagttcgagtctttccttaatggt cagggacttctgggttttgtcaccggctccatcccagctccaaaccaaaccaatgtggtctcagacattg atgggtcaacctctgcttcaccaaatccggagtactaaacctggttcaagacagaccgagtcgtcaaatc ttggcttcttggatccttttccgaggatatcctcagtgtggttgtcaactgcaacacttcacatgaggta tggatctctatagcgaaccattttaatagagtctcctcttctaggctgtttgaactgcaaagacgcttac agaatgttagtaaaagggataagaccatggatgcatatctcaacgatctcaagaacatttgtgaccaact agcatctgtaggtagtccagtgacagaaaagatgaaaatttttgctgcattgaatgggttaggtcgtgag tatgagccaatcaaaaccaccattgagaactctatggatactcagcctggtccaagtctagaaaatgtca ttcctaagctgactggttatgatgataggctccaaggatatcttgaggaaacaaccatttctccttatgt tgctttcaacatcaccacatctgatgatagctatcgcaactcctacaaccgtggcaagggtaagcccaat agaggcagaagctccttcagcactcgtggtagagggttccatcagcagatatcctccacaaccagttctt caagctcacagcctggtggttcttctgttatctgtaaaatctgtggcaaaatgagtcattctgcactcaa gtgttggcatcgattcaacaacagctagcaatatgaagacctccctcttgctctggctacaatgcgaatt acagatgtcacagaccaacacgggaatgaatggcttccggactcagcagcaactgctcatgtcaccaata gtcctcggtctctgcagcagtctcagccttatcacgggacagatgcaatcatggttgatgatggcaatta tctgccaatcactcacactggatccacaaacttggcttcctcatcaggtacagttcctcttactgatgtt cttgtttgtccaagtataacaaaatctctcttatctatgtcaaagctcacacaagattttccatgtactg ttgagtttgaatatgatggtgtgcgtgtgaatgataaggcaaccaagaagcttctcttaatgggaagcaa tcgtgatggtttgtattgtctgaaggatgacaagcagttccaggccttcttctccactcgtcaacgctca gctagtgatgaagtgtggcacagacgtcttgggcatccacatcctcagatccttcagtaacaggtgcaga atcactctatatctatcaataagactactaagtctctttgtgaagcatgtcaactcgggaagagtactag actgccatttatttcttcttcttttactgcaagtagacctcttgagagggttcactgtgacttgtgggga cccactacaataacctctgtacaaggctttcgctattatgcagtgtttattgatcattactctcgtttca gttggatttatcctttaaagctcaagtcagacttctacaatatctttcttgcttttcacaagctagtcga aaatcaacttagtcaaaagattagtgtttttcaatgcgatggtggtggagagtttgtcagtcataaattt ctgcaacatctccagagtcatgggattcaacaacagctctcatgtcctcacacccctcagcagaatggtc tagcagaaaggaagcacagacatttggttgagttaggtctttctatgctgtttcaaagtcatgttcctca caagttttgggttgaagcctttttcacagcaaacttcttgatcaatctattgcctacctctgctcttaag gaatcgatctcaccttatgaaaaactctatgacaagaagcctgactacacttctttaagatcatttggga gtgcctgttttccaacgctacgagattatgctgaaaacaaatttaacccttgctctcttaagtgtgtctt tctaggctacaatgaaaaatacaagggttatagatgcttgtatccacctacaggaagactctacatcagt agacatgttatctttgatgaatctgtataccccttctctcacacttacaagcatcttcacccgcagccta gaactcctctacttgcagcctggttgcggagctctgactctcctgctccttcaacctcaacatctccttc ttcaaggtcccctctcttcacgagcgctgactttccacctctaccacagagaaagacacccctactcccc actttagtgcctatctcaagtgtctctcatgcatccaatatcacaactcagcaaagtccagactttgatt ctgagcgtacgacagactttgattctgcttctattggcgacagctctcattcttcacaagcaggcagtga ctctgaagagaccatacaacaagcttcagttaatgttcatcaaactcatgcttcaaccaatgttcatcca atggtgactagagctaaagtaggtatttcaaaaccaaatccacgctatgtctttctgtcccataaagtct cttatcctgaaccgaaaacagtaacagcggctttgaaacatccaggatggaccggtgccatgacagaaga gattggaaactgttcagaaacacaaacttggtctcttgttccatacaagtcagatatgcatgttcttgga agcaaatgggtctttcgaaccaaactccatgccgatggcaccttaaacaagctcaaggctcgaatagtgg caaaaggatttctccaagaagaaggaatcgattatctcgagacctatagtccagtagttcgcacacctac tgtgaggctagttctgcacttagcaacagctctaaattgggacattaagcagatggatgtgaagaacgca ttcctgcatggagatctcaaggaaactgtttacatgactcagccagctggttttgttgaccctagcaaac cggatcatgtctgcttgcttcacaaatcaatatatggtctcaagcagtccccacgagcttggtttgacaa gtttagtacctttctgctggaatttggctttttctgcagtaagtctgatccatctctgttcatatacgct cacaacaacaacctgattctacttctcctgtatgttgatgacatggtgatcactggtaacagctcacaga ccctaacaagccttcttgcagcactcaacaaagagttcagaatgactgacatgggccagcttcactactt tttgggaatccaggttcaaagacaacaaaatggcttgttcatgtctcagcagaaatatgctgaggacctc ctgattgcagcgtctatggaacactgcactcctctgccaactcctcttcctgttcaacttgacagagtgc cacatcaagaagaactcttcagtgatccgacttacttcaggagtattgcaggaaagctccagtatctcac attgacaagacctgatatacagttcgcagtcaactttgtgtgccaaaagatgcaccagccaactatatca gactttcatcttctcaagcggattctcagatacattaaaggcaccattacaatgggaatctcctacagtc gtgactctcctactctcttgcaggcttacagtgacagcgattggggaaactgtaagcaaacgcgaagatc agttggtggtctatgtacattcatgggcacaaatcttgtctcatggtcctcaaagaagcatccgactgta tcacgcagctcaactgaagcagaatacaaatccttgagtgatgccgcatcagaaattctttggctaagca cacttctccgcgagcttagaatacctcttcccgacacaccggagctgttctgtgacaatttgtctgccgt ttatctcactgctaatccggcattccatgccagaacaaagcactttgacattgattttcattttgtcagg gaacgagtggctctgaaagctttggtggtgaaacatattcctggctctgagcaaattgcagatatcttca cgaagtcacttccttatgaagcgttcatacatttgcgaggcaaactcggtgttactctttcgcccacacc aagtttgagggggac1