;ID ATCOPIA88_I DNA ; ATH ; 4909 BP ;XX ;DE Internal region of the ATCOPIA88 copia-like LTR-retrotransposon. ;XX ;AC AB028606 ;XX ;DT 30-NOV-2001 (Rel. 6.3, Created) ;DT 30-NOV-2001 (Rel. 6.3, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW copia-like polyprotein; reverse transcriptase; the ATCOPIA88 ;KW family; ATCOPIA88LTR; ATCOPIA88_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4909) ;RA Kapitonov,V.V. and Jurka,J. ;RT Internal portion of the ATCOPIA88 copia-like LTR-retrotransposon. ;RL Repbase Reports 1:(3) p. 20 (2001) ;XX ;CC ATCOPIA88_I is an internal region of the ATCOPIA88 copia-like ;CC endogenous retrovirus flanked by the 97% identical ATCOPIA88LTR ;CC long terminal repeats, and a 5-bp target-site duplication (TAATG). ;CC ATCOPIA88 forms a young family of copia-like endogenous retroviruses ;CC present today in the A. thaliana genome. ;CC ATCOPIA88_I encodes remnants of the ATCOPIA88p copia-like ;CC polyprotein. An ORF encoding the polyprotein is damaged ;CC by several false stop codons and frame shifts. ;XX ;DR Positions 46168 41260 Accession No AB028606 GenBank (rel. 124.0) ;XX ;SQ Sequence 4909 BP; 1480 A; 904 C; 1132 G; 1393 T; 0 other; ATCOPIA88_I tgatatcaaagcgacaaagtttttcttcaaaaattctttgtgatctctgaaacttcgaatgacaaacccg aaccagactgaagctccggctgcgactgtggaggtgagaagaaccatctctccttacgagttgacctctg ccgacaatcccggcgcggtgatatcacaccctctctagaagggagttaattacgacgaatgggtttgcgg gatgaaaacggcgttgtcattacgcaagaaattcggattcctcgacggctcaatcccaaaaccggctgat ggatcacttgacttggaagattggtggacgattcaagcacttctcgtgtcttggataaagatgactatag atccatcgatgcgttcaacaatctctcacaagatgtggcaaaggatctatgggatcacttgaagaaacga tttggggtgatgaatggggctcggattcaacaaatccatgctggattagcttgttgcaaacagagaggtg cagcaatcgaagcgtactatgggaagctgacccaaatgtgggatagtcttgcgagttaccgaccaatacg agcgtgtaagtatggtttgtgtacgtgtgatcttgcgacggcacaagaagcggatcttgaagaagacaag gtgcatcaatttctttgtggacttgatgatcagtttcggacagttcgttcaacccttgttgctcgtgttc atgtgcagccattagaggaagtctacaacattttgcgacaagaagaggatcttcgcataaatgttgagga gaagcctacagatgtgacatccttttcagttcaaacctgacctcgtttcaaacttgacgacaaggaaaaa ggagttatgtgcaacttttttaatcgcattggccatagcccagacaagtgttatgcggtgtttggctatc caaaatggtggggtgataggccaaaaggcagaactttgcaaggacgaggtcatggcggtactaacggagg agctagaagaggttgtgggagcacctcctacaccaatgcagtccaagtcaatccactgacaagctatgag caagctaactacgttgtgacagaaaaggacagtgacgaagtaacgggatttatcgatttgcagtggaaag caattaagaatcttctcaacaatgggaagactaacgaaactgaaaaaactgacgggtaagtcttctttgc ctttaaggatagtggatactggtgcatcgtatcacttgatgggtcacttagacattctagaaagtgttaa ggaaatggaacaaatcagtattgtattggtcgatggaagagaaaaagtggcagttaaggaaagatcagtt aggataggaccttgtttgatactccgctcagtttattatgttgagaatttccacacagatttgatttctc tttgccaagtgatggatgagaacaattgcgtagggcagttagctgatcgttttcttgtggttcaggaccg cactacgaggatggtgtttggagttagtagacgtacaggagggactttccgctttagaagtatggagtca gcagcatttgtggaagtaagagatgataaatcttttgagctttggcataagaggatgggatatcattcaa acaaagtagttggtcttctccctgttgtttcaaatgttgtttctgatattttgaataaagcgtgtgatgt ttgtctccgcgctaagcaaacaagattatcttttccatttagtgagaataaaacgaaagggatttttgat ctattgtgatttatggggaccttatagaactccaactcattcgggtgctcgttacttcttaaccattgta gacgattactctcgtggagtatggctctatttgatgtctgaaaaatctgaagcttctaatcatctcaaga atttcttggccatgactactggtcagttcgatactccagtaaccttggagtacttattccaggttattta aaaggccaaagtcgggtctttctttcgtgttataagaagcgataacggatcagaatttctttgtctaagt gaattcttcaaacaacaaggcatagttcatgaaacgtcttttgttggcactcctcaacagaacggaagag tggagagaaaacaccagcatatactcaatgttgctagagcgcttggtttgaagccaatttaccgatagcg ttttggggcgaatgtgttctcactgcggcttacttaataaatcgaactccaagtatggtgttgaaaggaa tgacaccatatgagaggatatataatgagaaaccgaaatacaatcatatgaaggtgtttgggactctctg ctatgctcatgatcaatttcataaaggagataagtttgcttttcggagtcgtcgatgcgttttcatcgga tacccttatggaaaaaaggggtggaggttatatgacttggaaaaatatcaattctttgtttcaatagatg tggtattttatgaaaatgaatttccattcaagtctgaggtagaagaagaaattgcagaagaagaacttga agttctaaatttacagtctctgtttgtcgaaaatgaagaagaaaatggacgtacaagctcaattcgtgag gatggcccattaacaccacaatcgactattgggcctacaccaagcccaactgggttattgaaaacccaat ttctgaacacgctccttcacttcaaaacgtcatcatcgagggaagtcaaagaactgaaaatcaaaatcgc tccactatgattccgacgccaactccggcgattgttccaatcatgtcatcgacgacgaatctgcaggtcc aagaagaacaattgggtcgcggaaaaaggcagaaaactcagtcagtgaagttgaaagaatttgtggtaaa cacgggaattctgaaatcgaagacggcttcaacgtctgattctacatcgagtcatccaattgcaaatttc atttcttgtgagcgtttctctactcaacatcaagcatatttggctgcaataacttcgggcgtataaccaa agtcatttaaacaagcaatgaaagatgagaaatggaaaagtgctatgtcttcagaaattgatgctcaaga acgaaaccactcatggacgatagaagatttgccacaaggaaagcaagcaataggcagtaaatgggtttac aagctcaaatacaaattagacggtacattggaacgacataaagcgaggttagttgctctcggtaacaaac aaattgaaggtgtagactacggtgaaactttcgcaccagttgccaagatgggaactgtacggttggtttt ggatacaactgtgaaaaatgtgaataaaagaagaagagggttttcttactgaataatacttttcattaac actctcccaaactcacgatgaatacaaagagcttatacttatactacaaaaagaaccttctggatcctta tttgcagtcaaggatctggttacacttgtcaatcatctagccactctcttcttctgatgtgataggactg aaacggttacatagtacgatggtcggagagtcagctggttgactctgcttcttctgcaaattctgcaaac tctgttttgtctgaccgtgatgttgagaggaactcttgacttgggcattgttttgttgggcttgtgattg ggctgactgggcttgtgtcttgtcacttacaaaaaatagaagggatgttcaccaaatagacgtctacaat gcgtttctacatggtgatttagaggaagaaatatatatgagactgccacccggctttcaagcttctgatt cttttaaggtatgtagactttgcaagtcaatgtatgggttaaaacagagtccaagatgctggtttgcgaa actgtcaacaagcttacaagagtatggcttcgaacaaaataagttggattattcactgtttactctcgac aaaaatgatcgcatattcgtgtattggtgtatgttgacgatttgataatcagttctccgacggtcatgga tgacttcaagtcctatctttcatcgtgcttccatatgagtgatataggacttttgaaatattttttgggt attgaagtggctcggaactctacgggtatgtatctctgtcaaaggaaatatgctttggatattgtctccg acacaggcttgttaggatctaaacccgtagctttccccctggaaactaatcaccaactaggcctgtccaa gtcgccactcttacaagacccagaaccctatagacgactcattggaaggttgatttatctcgcagtaaca tgaccggatttggcgtactgcgttcatcttttggctcaatttatgcagcaaccaaaacaagatcattgga ctacaactttgcgagttgttaggtacttgaaaaacaatcttgggcaaggtattctgttgagagctgagac accattttgttttactggttggtgtgatagtgactatgcgagttgtcctttaacgagaaagtcagtcact ggttattttattcagcttggaggatcgccaatctcatgcaaaacaaaaaaaacaaaagacactgagtagg tcttctacagaagtagaatacagagcgatggcattcttaacacaagagttgattttggcttaaaaggatt cttcaatcgcttggagtaaagcactatcagtcaatgtctgtttggtgtgatagtaaggcaacaattcata cagcgacaaatctagtctttcaggaacgcaccaagcacgtcgaagttgattgtcattttgtacgcgacga ggtactatccaaaaatatacgcctgttacatgtacaaagtcacaaataacttgcagatatctttacaaag ccgttggggaagaaggaatttgatcggttatgtatcaagttgggcatacaagatttgcacgctccaactt gcgggaagg1