;ID ATCOPIA86_I DNA ; ATH ; 4287 BP ;XX ;DE Internal region of the ATCOPIA86 copia-like LTR-retrotransposon. ;XX ;AC AC007627 ;XX ;DT 30-NOV-2001 (Rel. 6.3, Created) ;DT 30-NOV-2001 (Rel. 6.3, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW copia-like polyprotein; reverse transcriptase; the ATCOPIA86 ;KW family; ATCOPIA86LTR; ATCOPIA86_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4287) ;RA Kapitonov,V.V. and Jurka,J. ;RT Internal portion of the ATCOPIA86 copia-like LTR-retrotransposon. ;RL Repbase Reports 1:(3) p. 16 (2001) ;XX ;CC ATCOPIA86_I is an internal region of the ATCOPIA86 copia-like ;CC endogenous retrovirus flanked by the 99% identical ATCOPIA86LTR ;CC long terminal repeats, and a 5-bp target-site duplication (TGTAG). ;CC ATCOPIA86 forms a separate family of copia-like retroviruses ;CC present in the A. thaliana genome. ;CC ATCOPIA86_I encodes remnants of the ATCOPIA86p copia-like ;CC polyprotein. The ORF which encodes ATCOPIA86p is damaged ;CC by one false frame shift. ;XX ;DR Positions 22265 26551 Accession No AC007627 GenBank (rel. 124.0) ;XX ;SQ Sequence 4287 BP; 1299 A; 928 C; 864 G; 1196 T; 0 other; ATCOPIA86_I tggtatcagagccatggattcatcaatccagctctattctcatccggttctacatatctcaaactgtgtt acagtccaactaaatgaaagaaattaccttctttggaagacacagtttgaatcctttctctctggccaaa gtctcctggggtttgtcaatggtgctattaaacctcctccagtcgacaacactctgactcacattgatgg tctcaccacagaggttccgaatccagactatcaagcatggctgaggtcggatcaagtggtgcgagcttgg cttctaggctctctgtctgaagatattctgcgagaggttgtccacaccaccacggctcaggatgtttgga ctactctagctctgcactttaacaaggtatcttcgtctcgtctctttgagctgcaaagaaaactgcaagt tatagagaagttagataaatcgatggatgattatcttaaggagattaaaagaatctgtgaacaacttact gctattggtagtcctgttagtgagaaaatgaagatttttgctgcattacatggtcttggcagagactatg agccaataaaaacttcaatcgaagggtctatggatcttgaacctcagcctacctttgaatctattatccc tcggttaactggttttgcggataggcttgctagctacaacacatgcatggaagtttcaccacatatggcc ttttatgcaaactattcaggcaaaggaagaggaagcttcaatgggaaacctggtggtaatcaaggcaaag gagggcaatactcaaccaaaggcagaggctttccacagcaaatcacttcaggctcaagttctccgggttc caacaacacagaaaacagaatcatgtgtcaaatttgtggaaaaccaggtcatccagctttgaagtgttgg catcgttttaataacagctatcagtatgaggaactccctgctaccttgactgcaatgagaattactgatg tgactgaccacaatggaaatgaatgggtaggagacagcggtgcaacagctcacattacaagctctcatca aaacctgcaacagtcacaaccatatggaggatcagatgcagtcatggtgggaaatggagattttctgcct atcactcacactggatcaactaccctaccaggaagctcaggtatattacctcttaaagatgttttggttt gtcctaacattggaaaatctctattgtctgtttcgaaacttacaagggattatccatgctccattaattt tgactgtgattatgtctgtgtgactgataaggcaacaaagaggcttctggctcagggaaacaacagtaat ggcttgtatgttctgaaggattcaccagttcatgccttttattcctctcgtcaacaaactatgtctgaag atatctggcatatgagactaggacatccaaatcaagaagtccttcagtatttgcacaagaacaaagctgt taatatcaacaaaagctccaaaggcatctgtgaagcatgtcagtttggtaaaagctcaaggttacctttc tcaagctcttgttctactacttcaaggcctctcagaagatacactgtgatctatggagacctgcaccagt gaagtcagtacaaggcttcagtttttatgttatctttgtagacaactactctagattctgttggttttac cctctaaagaataaatcagattttctaccaatattccataagtttcaagctttagtagaaaatcagtttc acagcaaaattggaagttttcaatgtgatggaggtggagagttcactagcctcaactttgtgaatcattt gcatcaacatggaatccaacagttaatctcctgtccttatacaccacaacagaatggtttggcagaaaga aagcataggcaccttattgaattgggattggcaatgatgtgtcacagccgcatgccaatgagatactggg ttgaaggattcttcacagcaaacttcctcattaatctcctgccttcttcagttctgtcagacaacaaaag tccctatgaggtattatttggtcagaaaccagattatacttctctcagagtctttggatgtagctgttat cctacattaagagattatgcaaagaacaaatttgatccaaggtctctgaagtgtgtgtttcttggatata atgaaaagtataagggatacagatgcttactgatttcaacaggtcgagtttacatcagtcgtcatgtgct attcgatgaggaggacttcccattccataaggtatcggcttccccacagttcatcactactccacttcgc atggcttggcaaaagagttttcaacctcagacatcagaaacaacagttagttcagaccagaatcagaaag tatatgctcagatcgacatagaagcttcagcaatacctattcctgctacttttccaactagtggtgatac tgggagttctgggtgtacggcaggcattgatcctgttcctataggcaacagctctttagtatcatcacct agcttggcaaatgtagtgacatctgcaacaacagaaacagctacaacaagtcagtcatcagcaacaacaa cagaaacaactacagaaaatagaggattatcagtacctactgtatcatctgttagacagtctcaaagaca tcacatggttacaagatctcaggtgggaattagaaaactaaatcccaagtatgctcttcttacttcgaga gtcaaatatcctgaaccaaaaacagtaacttctgccttaaaagatgaaggatggaataaagcgatgcatg aagagtatggaaactgtcaagaagcaggaacatggtctcttgtaccttattctccagatatgcacgtgtt gggcagtaaatgggtcttcagaaccaagctcaatgcagatggatctctggataaattaaaggccaggtta gttgctaaaggatttgatcaagaagaaggaattgattaccttgaaacttacagccctgtagtaagaactg ctactgtaaggactattcttcatgtggcaacaatcatgggttgggaaatcaagcaaatggatgtgaaaaa cgccttcctccatggtgatctcacagaaaccgtctatatgacacaacctgctgggtttattgatcctgca aaaagagatcatgtctgtcacttatacaaatcactctatggattaaaacagtcaccaagagcatggtttg acaagttcagcacttatcttttggagtttggcttcatctgcagtatgtctgacccttctctcttcatcta cataaaaggaaaagatataatcatgcttcttctttatgttgatgatatggcaatcacgggaaatagctca gataccttagctactctccttgtggaactcagtaaacgcttcagaatgaaagacatgggtcagctacact attttcttggtatacaggcgcaattccattcagggggactgtttctctcgcaacagaagtacgcagagga cctccttgctgtagctggtatgcttgactgtgctcccatgccaacacccctggctctacaattaaacaag gtatctcatcaagaccaacaatttgaaaacccaacatatttcagaagtttggcaggaaagcttcagtatc ttaccttgactagacctgatatacaattcgctgtgaattatgtgtgccaaaagatgcacatgcctaccgt tgcagacttcaatctcctgaaacgaatcatcgggtacataaaaggaactgtaaccatgggaatttctttt aacaaggagacagactgtaccttgagagcttatagcgacagtgactatggaggttgtgaaacaacaagca gatcgactggtgggttctgtaccttccttggaaacaacattatctcctggcagtcacagaaacaaccaac tgttgctaaaagttctacagaagcagaatatagagctctatcagaagcagcttcggaaattacctggcta tgcaagattctgaaagaactcggtattcctcttcatcaaacaccagaactatacggggataatctctcct ctgtttacctcactgcgaatccgactttccacaagaagagtaagcactttgccaatcattaccactacgt tcgggaacaggttgctctgggaactcttcgggtcactcacatctcgaaccagtttcagatcgcagacatc ttcaccaaatctctgcctcacggtcctttctcttctcttcgattcaaacttggcgtagatgttccaccca ctccaaatttgaggggg1