;ID ATCOPIA84_I DNA ; ATH ; 4570 BP ;XX ;DE Internal region of the ATCOPIA84 copia-like LTR-retrotransposon. ;XX ;AC AC027032 ;XX ;DT 30-NOV-2001 (Rel. 6.3, Created) ;DT 30-NOV-2001 (Rel. 6.3, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW copia-like polyprotein; reverse transcriptase; the ATCOPIA84 ;KW family; ATCOPIA84LTR; ATCOPIA84_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4570) ;RA Kapitonov,V.V. and Jurka,J. ;RT Internal portion of the ATCOPIA84 copia-like LTR-retrotransposon. ;RL Repbase Reports 1:(3) p. 12 (2001) ;XX ;CC ATCOPIA84_I is an internal region of the ATCOPIA84 copia-like ;CC endogenous retrovirus flanked by the 90% identical ATCOPIA84LTR ;CC long terminal repeats, and a 5-bp target-site duplication (GAGAA). ;CC ATCOPIA84 forms a separate family of copia-like retroviruses ;CC present in the A. thaliana genome. ;CC ATCOPIA84_I encodes remnants of the ATCOPIA84p copia-like ;CC polyprotein. The ORF which encodes ATCOPIA84p is damaged ;CC by multiple false stop codons and other mutations. ;XX ;DR Positions 29375 33944 Accession No AC027032 GenBank (rel. 124.0) ;XX ;SQ Sequence 4570 BP; 1363 A; 1207 C; 744 G; 1256 T; 0 other; ATCOPIA84_I tggtatcagagcataaacgctcctaacaaaacctattttttttttcaaggccgccatcttcacacctctc gccatggctgctcaaaacgatgctatccctcttaattcaaacatagttcttaatcaacatgatgaatgtc tcaacgctcataagcaacaactacctcatgtggagcttacaagttcacgcccaccttgacggacatggcc ttgatggtcacctcgacggatcgatcaacatccctccacccacgattacatcaaatggtgttatatcaga gaatctgcagttcaccaagtataaaagccaagacaagctgatctactctaatctcattggagaaatctca acaaatctccaacccttggtgtcacgcacgaccaccgccaatgagatctagaccaagctctctgacactt atgcgaaaccgagtcgcatccatctccaacagattagaaggcaaatcacaagctggacaaagggaacaaa aacaattgatgagtacatgaatggtctcacgatacgataggatgagatggccttacttagcagacctgca taccatgaaaatatcattgagaagatctttatcgggctgctagaagaatacaagactgtgattgatcaaa ttgaaggcagagatcatcagttacagaagttcatgagagattactgaatcatgaagggagactcctcact gttgctacacaaccaaccaattttccagtctctgctcatgttaacacaacaacaataacaaccgctacaa caacaatggatgacgctctaacaacaacaacaactccaactggcaaccatctcagtcccaaaacaacagt cgttctgacacccgtgtatcgaagccgttcttaggcaaatgtcagttttgaagccacaatgctaggcgat gcccccaactcaatcacttcagtccatgtcgtctctgtctcttaccaatccgttcaagccctcgcaacca cgtgccaatctcgcagttggttcatcttacgcgaccaacccgtggctccttgactcaagtgcaacacacc atctaacatctgatctcaacaacttagctcttcaccagccatacaatggtggtgatgatgtcatgattgc ggatgggtcgaacatgaccatctctcatacgagttccactctcatttctaatcaaatttgatctttactt tttgataaaatattgtgtgtgcttaatatacagatgaatcttatatctgtatatcgcctttgcaacacta atcaagtctctgttgaattttttccagcttcatttcaggtgaaagatctcagtacgaggtcccattactc caatggagaactaaaaatgaactgtacgaatgaccgatgtcatctcctcaagctgttgcgatggtgtcgt ctgttggtccaaaaccaactctcacatcttggcattcaagattgggacatccttcttctgttttgcattc aataatttctcagttttctctactcgtttcttcttcttcacaaaaacttttatcttgttccgaatgctct attaataaaagccataaattaccttttactaaaaccttcattgcctccacacgacctcttgaatatatat gtaccgatgtttggacatcaccaaacaattactttgtcctcatagatcatttcactcgttactcttggtt atatcctctgcaacgcaagtctgatgtcaaagaggtttttattgtattcaaaaacctcgttgaaaaccga ttccaatgccgaattggtaccttgttctaagacaatggaggtgaatatatcgcacttcgtagcttcctca cagctcaaggcatctcacatcttacctcactgccacacaccccggaacacaacagcctcgctaaacgcaa acatatgcatatcgtcgagacatgccttacacttatgtcaacggcttctgatcctctcgccttttggccc tatgcttttgcaactacgatatatttcatcaatcgcatgcctacatcagtcctctctatgcaatcactat ttgagaagctatttgggacaacaccaaattatgggaagcttagagtgtttggctgcctctgtttcccttg attacaaccgtatacaagtaaaaagcttcaagctctgtctcaacggtgtgttttccttggttactcgaca tctcaaagtgcatacttttgttatgatcaagcaacaagatatatgtatgcatcacgacatgttcaattcg atgaaaaaatgtttccagtctgtccaacgctacacctcatggtgcaagaagaaaccgtcaattctgaatc tccatcagcacctgtcgtctcacctatacaacctgaaataccaattggccacacaccggttacattgcca ccgtcgtaagctgaaaccccgtcgtgagctgcttcctcgtcgtcaccttcgtcttcctcgcgaaatgaag aagacaaccaaatcttagaaaatttgggcccaactcaaacaggcccaacaaccacttctcagttaaatcc ggcccgaaaacagctcctagcccacatcaacacaagcccgaatcaaaacagagaagaaatgctcacctcg tcttcttcacgacaaatcagagagacatcactgtcgctcagctctcaaactccggccagctcaacgggac cctcacgctctgaccttcacctctctccgtcgccgaatacttagttatcgtcttcttcctctaaaaactc ttcttcctcatctacctcttagcccactactccacataaaaatggattgacacccacaatccagcaaatt cctccacgtattgagcccaatgttccaccccaacatgagttacgagtcataactcagccacaaccaccaa cagatgcaacaacatcacaccaagtcgtgtctcatcaatcacataaccaaaacgatcaaccttcagaaaa tgtccccaacatgaaaacttgagccaaaaataacataaccaaaccaatccaaaaatttaatctcattgtt tcaggtccaccatcgaaggaacctacaacaatcaagcaagctctcaaagaccaaaactggagtcgtgggt gctcatccgaatttgatgctctaacaatacaccaaacatgggatttggtacctccagcctctacacaaaa catcgttggatgtaaatgtgtcttcacgacaaaatatttctccaatggcgtcttggagagatataaagtg cgccttgttgccaaggtttccaccaacaatactggaaagactatgctgaaacattcagtccggtaattaa gtccacaaccatccgtcttgttctcgatgtcgcaactgcaaaagcatggcaacttaaacagttggatgtc aacaatgcttttctccaaggcaaactcaccgaagaagtatatatgtcacaaccacctgggtttattgaca ttgataggccctcatacgtttgccgattgaagaaaccaatatatgggcttaaacaagcacaaagggcatg gtatacgactttgaaacaatatttactatgttctggctttgtcaactctgtggcaaatacgtcgttgttc atacacacctcaggacataacatcacatatgtcttattgtacgttgacgacattattgtcactaggaaca acaacgttgtggtcaacaaatttttttcctcgtttgtagaacgcttctcgatcaaagatctgtcggatct ccattcctttcttggaatcgaggtaaaccaaattgccaaaggtcttcatcttatgcagcaaaaatacatc acaaatcttcttattaagcacaatatgcttgacgccaaaccagtcactacgccattaccaacctcacctc aactcatacttgacagtggtgatcctctccctaacgcttcccaatatcgttctattgtcggcagcctcca atatatctccttcacacgcactgatatctccttcgctgtcaataaattatcacagtttgtccataagcca acacatgaactcttgcaggccgcgaaacgagtactccgatatctagctggcacaatcacacagagtatat ttttacatgcctcctctcccatgactcttcatgcatttttagatgcagattggacatgtgacacgaatga taatatctccataaatgggtatatcatctatcttggctctaacccgatttcttggtcctcacgcaaacaa cgaggtgttgcaagatcttcattcgagtcagaatattgagctgttgccaattgtgctgcggaggtacgat ggctttgttctttactctatgaactcaaaattccgttgccaatagctccggttatcaattgtgataatat tggagcaacatatctttgtgtgaacccgagtttctattcccagatgaaacacaatgctctcgattatcac tttgtacgaaatcaaatccaagatggcttgctacagatctttcatgtctctaccaacgttcaattggcgg atactctaaccaaaccactaccgagaacacgtttccaacatgcatgtcgcaagattggtgttattcaagt acctccatcttgaaggggtg1