;ID ATCOPIA80_I DNA ; ATH ; 3998 BP ;XX ;DE Internal region of the ATCOPIA80 copia-like LTR-retrotransposon. ;XX ;AC AL137079 ;XX ;DT 07-NOV-2001 (Rel. 6.3, Created) ;DT 07-NOV-2001 (Rel. 6.3, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW ATCOPIA80 family; ATCOPIA80LTR; ATCOPIA80_I. ;XX ;OS thale cress ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Charophyta/Embryophyta group; ;OC Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; ;OC Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; ;OC Arabidopsis. ;XX ;RN [1] (bases -16 to 3997) ;RA Nyakatura,G., Fartmann,B., Dauner,D., Sterr,W., Holland,R., ;RA Weichselgartner,M., Mewes,H.W., Lemcke,K., Mayer,K.F.X., ;RA Quetier,F. and Salanoubat,M. ;RL Direct submission in GenBank (January 21, 2000) ;XX ;RN [2] (bases 1 to 3998) ;RA Kapitonov,V.V. and Jurka,J. ;RT Internal portion of the ATCOPIA80 copia-like LTR retrotransposon. ;RL Direct submission (November7, 2001) ;XX ;CC ATCOPIA80_I is an internal portion of the ATCOPIA80 copia-like ;CC LTR-retrotransposon. It has been integrated in the A. thaliana genome ;CC more than 10 million years ago. There is only a 93% identity between ;CC long terminal repeats (ATCOPIA80LTR) that flank ATCOPIA80_I. ;CC The ATCOPIA80_I open reading frame that encoded originally a ;CC copia-like polyprotein is damaged by numerous endogenous mutations. ;XX ;DR Positions 30747 34744 Accession No AL137079 GenBank (rel. 126.0) ;XX ;SQ Sequence 3998 BP; 1180 A; 1097 C; 636 G; 1085 T; 0 other; ATCOPIA80_I atggtatcagagctatcggtcctaaaaacctaaaaattctccattttttttactcagccgtcaccatggc aaactcaaaaaacacaaacgatgcaatatcgatcacaacaaacaccatccacaacatcaacatgttcaat atcacgaaactaacgaccacaaactacctcgtgtggaaattccaagttcatgctctcattgatgggtatg aactagtgcaccaccttgatgacaccacagaaattccggttgtcactgtaatagttggatatgtgacatc cccaaatgttgcttacaccaaatggcgtcgtcaagataggatcatatacagtgttctcataggctccatc tcaccgtctcttcaagagattgttggcgtcatcaagataggcttatatacagtgccgctgagatctagac gaagctagcctccacatatgtcaatccttcatgtacacacatccgctcactgatagatcagctcaaactc ttccacaaaggtaccttaaccattgatgagtatatcaagggaatcacaacttttctcgatactcttgctc ttcttggaaaacctcttgaacatgatgaccagattgagcacattatcgagggtcttcccgatgactacaa acctgtcattgatcaaatcgttgccaaggataagcctcctcaaaccacagaagtccatgaacgacttctt aaccatgaagccaagcttctctccaagcaagctgctgccacatcgatggttcctgtctctgccaacactg cccaacaccgcaacaactacaacaaccgcaacaataacaatagaaaacgatacaataataacaacaacaa caacaacaacaacaacacatcctagcagccttcgaacaatcagaccataccagacgaaagggtctccaaa ccgtgtttgggcaattgccaaatatgtcaaacccaagggcatagtgctcgacgctgcccgcggtttcagt ctcttcaaacatcacagagtcaccctcaaagctctcctttccgcccatgacaaccacgagcaaacctagc cattgggtcacaatatcctgcctcgccttggttacttgattctggcgcgactcatcatcttacttctgat ttcaagaacttggcgctacaccaaccgtacaatggcggtgacgatgctctcatagctgatgggtcaacaa tatctctatcatacacgggttccactcttcttcccaatcaaatacgtgctttacttacttgataaaatat tatgtgttccggatacacaaaatttcatttctgtatatcgtctttgtaacactaatcgtgttttggttta atttgcttgtgacatctcctcaaactactgcgatggtttcttgttccggtccaaagacaactcttacatc ttggcactcaagattggggcatccgtcttcttctattttgcattctattatttcaaagcattctctgccg ttttcttcttcacaacaaaaacacttaccttgctcagaatatcttataaataatagccataagcttcctt ctactcaaactaccattgtctctacttgtcctctagaaatcatttttaccgatgtttggacatcacctct ttattcctttgataatcacaaatactaccttgttttggttgatcactttacccgttatacttggttatat ccgcttaaacgcaagtctgatgtccgaaaatattctaagcctttgtagccctagttgagaatcgttttca ctgccgcattgggactctgctttcggataacggaggggaatttgttgcacttcgaagcttcctctctaca catggaatcagtcatctcacctctccatctcatacgcctgaaaacaacagccttgctgaacgcaaacacc ggcatatagtggaaactggtctcatgcttatgtcaattgctttggttccaaaagagtattggacgtacgc cttctctatcgcggtctatctcataaaccgaatgccaactccggttctctccatgacgtcaccatttcat aaactctttgggatatcacctaattatgagaagcgtcgggtcttcggttgtgtttgttacccttgggtgc gttcgtagacgagacataaacttgacaatcgttctcaacaatgtatcttccttaggtactctacttctca tagtgcatatttttgctttcatccccctaccaagcgaatgtatgtgtcaaggcacgttcaatttgctgaa tctgttttcccattcgtgaagcccaatcgagaggaccacaccaataatgtggtaaattccagctcgccgt tgttgatattgctcgcaccacctcagatatctccgtcaccaccgtcgacgcctactgtccaacctgaact ccaactcatccgctgcctagacataactcacgtgtttaagacgacaatggtcatcaagactcaccaagaa tattgggctcaaatcaaacaggcccattccaatcaaataatctggcccaatacaataacccatcaacaac aagcccatcatccatcacccagaatttgcccaacaacacaacaactcgtacatcatcatcttcgtcttca ccttcgtctcacaccagagcttatcagatgtcaccggtcaccccgccaacttcgtcaacgccaccgggat ccccgcactctggccttcgcctctcaccacaaccatcgtcatcgtcacaagtattatctcatatccctaa ctcttcctcatctcatatatctgagcctacagctccaattatacatgggtcgcaaatctcgacccatgca gaccctctttcaattgagcccattgctccacgccaaaatgagttgcaacccacaactcagcaaaacccac aaacaaatccacaaaatctaatccaagctgcgcctattcaaccacaaaaccaaattcataaaccaccaca aaataatcacaatatgcgaacttgagccaaaaacaatatacacaaaccaataaacaaactcagcctcaca gtcactgccaataaacacaaatccaagtacaaatccaaggaactgacaacaattcaacaagccttgaaag atgaaaattagagttgtgcctcttctcatgaattcgatgcacttatgaagaatcacacctgggatttagt cccaccacaacctactcaaaatatcattggctgcaaataggtctttatgacgaaattccatgccaatggg ctcctagatcgatataaagcaagacttgtcgctaagggttttcatcaacggtatgggcaagactacgcag aaaccttcagtcctgtcattaaatgaactacgcagaaaccttcagtcctgacatttcatacgccatcaat cgcctatcccaattcattcacaagcccactaatgagcattggcaagctgcaaaacgggtgttacgatact tggcaggtacacttacacatggaatatatcttaatgctgcctcaccaatgcttcttcatgcctattccga tgctgattggggtggtgatactgaatattacatctccacgaatggctacttaatctatcttggtcgtaat ccaatctcttggacttcaaagaaacaacgcggtgttgctcgcttgtccagtgaagctgaataccgggccg ttgcaaatactgcttacgaggtacaatggctatgttctctactcactgaactacaaatatccttaccgac agctctagtgatctactgtgacaacatattgccctcgactactgtgacaacatactatgacaattgccta tctttgcgcaaatccggtattccactcccgcatgaaacatattgccctcgactatcatttagttcacaat caaatacatggtagaatgatgcgtgcagcttatatctctacacttgatcaactggtggatacacttacca agcctcttccacgatcacgatttcaacaagcatgtgtcaagattggagtcactcaagtacctctatcttg agggagcg1