;ID ATCOPIA79_I DNA ; ATH ; 4342 BP ;XX ;DE Internal region of the ATCOPIA79 copia-like LTR-retrotransposon. ;XX ;AC AC007915 ;XX ;DT 07-NOV-2001 (Rel. 6.3, Created) ;DT 07-NOV-2001 (Rel. 6.3, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW copia-like polyprotein; ATCOPIA79LTR; ATCOPIA79_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4342) ;RA Kapitonov,V.V. and Jurka,J. ;RT Internal region of ATCOPIA79 copia-like LTR-retrotransposon. ;RL Direct submission (November 7, 2001) ;XX ;CC ATCOPIA79_I is an internal region of the ATCOPIA79 copia-like ;CC endogenous retrovirus flanked by the 97% identical ATCOPIA79LTR ;CC long terminal repeats, and a 5-bp target-site duplication (CAAAG). ;CC ATCOPIA79_I encodes remnants of the ATCOPIA79p copia-like ;CC polyprotein, which is slightly damaged by false stop codons ;CC and other mutations. ;XX ;DR Positions 54717 50376 Accession No AC007915 GenBank (rel. 124.0) ;XX ;SQ Sequence 4342 BP; 1323 A; 965 C; 877 G; 1177 T; 0 other; ATCOPIA79_I tggtatcagagcacagcggtctatgatggatcaatctatccaactctactcacctcctgttcttcacatc tccaactgtgtcactgttaagctcaatgagcaaaactactctcttaagaagacacagtttgagtcctttc tttctggccaaaaccttctaggctttgtcaatgggtcactcaagcctcctcctgcaacaactccattcaa caacatcgatggtcttactattgaggtaccaaatccagagtatcatacctggaacagatctgaccaagta gtccgagcctggctgttgggatctctgaatgaagacatcatgcaggaagttgtcaactgtgccacctcct atcaagtctggaatgctttggctcaacactgcaataaggtatcttcatcacgactctttgagctacagag aaagcttcaaaccatagataaacaggataaatccatggaaacttaccttaaggagataaagagggtttgt gaacagctagcttccataggcagtcctgttagtgaacagatgaagatatttgctgcacttcatgggttag gtagagagtatgagcctatcaaaacatctgtagaaggttcaatggatactcagccaccacctacctttga gagtgtgatttcaaggctgacaggatttgctgataggctgaacagctatggtcctgatactgaaacttca cctcacatggctttcaatgcttcaagatcagactcctctggttactacaacaacaacaacaaccgaggaa aaggcaactaaagatttgggagtggaaaaagcaaagattcattctccacacgtggtagaggttttcatca acaaatttcacaaaactcaaatggagaaagagtcatttgtcagatctgtggcaaacctggtcatcatgct ttgaagtgttggcatcggttcaacaacagctaccaagatgaggatctgccagcagctcttgcaatactca ggataactgatgtcacagatcaatccggtggtgaatgggtaggtgactctggctctactgctcacatcac caatgcacctcacaagctcagtcagactcagctgtatgaaggaagtgactcagtaatggtgggaaatgga aactttcttcccataacacacacatgattaggcagtcttccttctacttcaggtaacttacctttaaatg atgttcttgtgtgtcctgatatctctaaaccctttttgtcagtttccaagctcaccaatgactatccctg cgtatttcaatttgactgtgatgatgttcgaatctatgataaggcaacaaggaaactgttgacaaaggga aagcatagtaagggactttatgtgttgaaggactcaccagttcaagcactctactcttcaagacagcaag gagcgagtgaagatatatggcatcaacgactggggcatcctcactctcaagtccttcaagtgctatctgc aaacaaatctatcagtgttggaaataaaagtaccaagatggtgtgtgagtcttgccagcttgggaaaagt gttagactccctttttctgcttcaactttttgtagctactagacctctagagagaatacactgtgatctc tggggtccttgacctattaaatcaaatcaaggattcagttattatgcagtgttcattgataactactcaa gattttgctggttctacccattaaagctcaaatcagactttactcatacctttactgtgttccaagatat ggttgaaaatcaatatcaaaccaagattggatctttccagtgtgatggagggggagagttcacaagcaga aagctaactgatcacctacaacaatgcgggatcaaacagcttatctcttgtccctacacttcacaacaga atgggttagctgaaagaaaacatagacacattattgaacttggtctctcaatgatgtttcagagtacccg tcctcagaagttttgggtagaagccttctacactgcgagtttcttaatcaatctccttcctacaacagct ctagatgagaagtacagtccttatgagaagctgcatggtaagcctccagaatactcagcactcagagtct ttggttgtgcctgctatcccaccttgagagattatgcgtctaacaagtttgatcctagatcactcaagtg tgtgtttctgggttataatgataaatacaaggggtacaggtgcttcttaccttcaactggaagggtttac atcagtcgccatgtcatctttgatgaaactgtcttcccttttgctcagtctcattcaagaccaaattcag gaagtcttactcctttgatgctagcctggacaaagggaatcaacacagtaagtaaacctcaacctaaatc agatgacagtttattcacaagtgaagattttcctccactacctacaagagaaacacctatactaccaata ccaataccaagaccgactgtagtacctgctgtggaagaggaaagaagttatgggtgtacggcgggcttag atcatgttcctataggcaacaacttctcttcttcttctcacagtcctggtattgcagaagaaacgtcaga tcagtctacagaaagaatattagatcagttatcaacaacaacaactcaaaatgaaagtcaagaagaaatg ttacctagttaagaacctgtgcaagagcctgttgtaactcagtctactcaccctatgaccacaagacaaa agagtgggatcagaaagccaaacccaagatatgctttactgactcacaaagtgtcttaccctgaacctaa gacagttgctgcagctctaaaagacccaggatggacaggtgccatgggagaagaaatgggaaattgcaaa gaagctgaaacttggtctctggttccttatacaccagacatgcttgttttaggcagcaaatggattttca ggaccaaactaaatgcagatggatccctgcaaaagctgaaagcaaggttagtaacacaaggttataatca agctgaagggatagattacttagaaacttacagtccagtcgtcagaacagctactgtgagaggagttcta catcttgcaacgattatggagtgggatatcaagcagatggacgtgcaaaatgcatttctccatggtgact taacagaaacagtctatatggctcaacctgcaggttttgtagatccagacaaaccaaattatgtctgtca tcttcataaatctttgtacgggatgaaacagtcacctagagcatggtttgacaagttcagtacatacctc ttggaatttgggtttcactgcagcattccagatccatctctattcgtctacagcagaggaaaagacatca ttcttcttctcctgtatgtcaatgatatgctgattactggaaacagctcagaaacacttgcctctctcct tgcagaactcaacaaaagattcaagatgaaagatatgggtcagatgcattatttcttgggaattcaagct caatttcattctgaaggtctattcctatctcagcaaaagtatgcagaggacttacccattgcagcatcga tgagtgactgtgccccaatgccgactcctctgcttcttcagctaaacaaacaaaggaaacagaatcagga taccttttaaaacccaacatatttccgcagccttgctggtaagctccaatatttgactcttaccagacct gatattcagtttgcagtgaactatgtttaccaaaagatgcatgctcctactactctggatttcttgttgc tgaaaaggattttaagatatgttaagggtacagttactatgggaataaacttcaggaagaagtcagattg cacattacgagcttatagtgacagtgactggtctggttgtcctgaaacaagacgatcaaccggaggctac ttcacttatctgggtctgaaccttatctcctggtcttctcagaagcagtcgtctgtgtcaaagagctcca ctgaagcagaatacagaactctctctgaagcagcttctgaaatcacatggctcagctcaattatgaagga attgcgagtaccccttctaaaaccaccacaactatactgcgacaatctctctgcggtctacctaacagca aatccagcgtttcacaagagaacaaagcatttcgagaaccactatcactatgtgagagaaagagtggctc ttggactgttggaagtcagacacatacctggtcatgagcagatcgcagacatcttcactaaatcgcttcc gttcaatgcgtttacatctctcaggtacaaactcggtgtagttgtgccacccacaccgggtttgcagggg ga1