;ID ATCOPIA77_I DNA ; ATH ; 4520 BP ;XX ;DE Internal region of ATCOPIA77 copia-like LTR-retrotransposon. ;XX ;AC AC006304, AC007210 ;XX ;DT 05-NOV-2001 (Rel. 6.2, Created) ;DT 05-NOV-2001 (Rel. 6.2, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW copia-like polyprotein; ATCOPIA77LTR; ATCOPIA77_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4520) ;RA Kapitonov,V.V. and Jurka,J. ;RT Internal region of ATCOPIA77 copia-like LTR-retrotransposon. ;RL Repbase Reports 1:(2) p. 36 (2001) ;XX ;CC ATCOPIA77_I is an internal region of the ATCOPIA77 copia-like ;CC endogenous retrovirus flanked by the 97% identical ATCOPIA77LTR ;CC long terminal repeats, and a 5-bp target-site duplication (CTTTG). ;CC ATCOPIA77_I's CDS, which encodes remnants of the ATCOPIA77p ;CC copia-like polyprotein, is slightly damaged by false stop codons ;CC and other mutations. ;CC ATENSPM1A transposon is inserted into ATCOPIA77_I and ;CC flanked by the CTA target site duplication. ATENSPM1A and the ;CC CTA repeat are removed from the ATCOPIA77_I sequence described ;CC here. ;XX ;DR beg: Positions 5552 1 Accession No AC006841 GenBank (rel. 124.0) ;DR end: Positions 16697 20193 Accession No AC007210 GenBank (rel. 124.0) ;XX ;SQ Sequence 4520 BP; 1228 A; 955 C; 1043 G; 1294 T; 0 other; ATCOPIA77_I tggtatcagagccctgacaatttttttttctattgtcttaaacatgtttgctttgaaacgatggccaccc cagcaaactctgatgcgaccgaaacgaccacgacccctaacccgatggagacacgacgcaccatctcacc ttacgaccttaccgcagccgacaatccaggtgccgtgatctctcatcccttattcaagggatccaactac gatgaatggtcttgcggcatgaaaacagctctctgctctcgcaagaaatttggttttcttgatggctcga ttgctaggccagcagaagggtctgcagatcttgacgattggtggacgattcaggccttacttgtgtcctg gatcaagatgtccatcgattcatctctccgttcgagtatttcccatcgtgatgttgccaaagatttgtgg gacaacttgaagaagagattttctgtgacgaatggtccgcgtattcagcaactgaaggcggagttggcgt gttgcaagcaacgtggtctcgccattgaggcgtactactgaaaactgaaccagatttgggacaacatggc tcattatcgtcccgtgcgtgtctgcaaatgtggaaagtgtgactgcgatcttggatttctccaagaacag gaccgtgaaagtgacaaagttcatgagtttctgtctggtcttgactacagttttcgaactgttcgatctt ctctggtttcccgtgtgcctatccagtctctggaggaggtttacaatgttgttcgtcaagaggaagatct caaaactacggtgcatcactatgaagattcctctcaagttgtggctcatgcggttcaaaccaagtcacgt cccatctccgatcgaattgatgctttcgagagagctgtggtttgtaaacattgtaatcgctccggtcatg cctccaacaactgctttgcagtcgtcgggtatcctgaatggtggggtgagagaccacgtagccgtgttgt taatggaagaggcaaaggcgtcacacccggagctgcttctgttggtcgagggcgtcatatcaacgtcaat gctgttcatgtttctcaacaaccacaaacagaacaagcgaattatgttatcactgatgcagaccgtgatg gtgtgagtggctttagtgatgtggagtggcgtcgtttgaaggtcttactcaatggtggtgcaagcacgag cacagaaaaactctcgggtaagtctttaacatcctcttggatattagatacgggtgcttctcaccactta acgggaaattttgatctgctcacaagtgttagagatatggatcctgttttagtcatactagctgatggga gacagaggatttccgtaaaagaaggctatgttgttttggattcccatcttgtgttaaaatcagtttattt tgttgaggagtaaacaacggatctgattgttgttggtcagttaatggatgaaaatcgttgtgttgttcaa ctcgctgatcagtttcttgtggttcaggaccgcgtttcgaggatggtgattggtgcggtaggagagaggc tggaacctacttttgcaaaacggagttggcagcatcggtgaggacacaagatgacaagtcatatgagctg tggcatcatcgcatgggacatccgtgtgcacaagttgttggctctcttaagaatgttacagtttcaattc gttctgatattttgaataaagcgtgtgatgtctgtctccgcgccaagcaaactagatctccttttccgat tagtatcaataaaactacacaagcttttgagttgattcattctgatttgtggggtccgtaccgaacaatt tcgcattgtggagctcgctattttttaacacttgttgatgatttctcaagaagtgtttggattcatcttc ttaacgacaaaacagaggctcctacttggataaagaattttattgccatggtagaaacgcagttttcaac aagagtaaagagttttcgcagtgataatggaaccgagttcacaagtttggcaagctattttcgacagcaa gggattctttaagagacttcctgtgtgggtacaccacaacaaaattgaagagccgaacgcaaacaccgac acattctgaatgtggcaagagcattgcgctttcaaggacacttaccaatccaattttggggtgagtgtat cctcacagctggttatttaattaatcgtattccttcatcagttctgaatggtctaacaccatatgagaaa ttgtataagaaagagcccgattatacacatctcaaagtatttgggagcttgtgctatgctcataatcaag gtcataagggagacaagtttgaatcgagaagttgaaagtgtgtgtttgttggctatccatatggcaaaaa gggttggaggctatatgattgcgaaacagaggagtttttcatctctcgcgatgtggtgttctgcgaagat cagtttccgtttgataagtcatcttcatcatcggcttctcctgtacacgaagaagaagaagagttatggg cttcattcagtatgaacccattagctgaaattgaagataggcccgataagggcaaaagcccactaactga ttcaagtccatcttcattatccagcccagatacaaacattgcttcttcatcctctacgagtctctcgacg cctccgtccacttcctctgattcatcttcgtcaccaccgacctccacaactcagtctgacaattccgatc aaggattgactaccctcgaagctacgtctaactccacgaatcctgtgccaccatcatcaaatctgttggg tcgaggaaagagaccgaaaattccatctgtcagactcaacaattatgtggttaatacggcacatggaaaa ttgctcaacaagtctggtaaaacccaatatcccattgcaaactatgtctcttgtacacgtttttcagaga cacatcgtgtttatctagcggctatcactgagaatattgagcccaaatcattcaagtcagctatggagaa tgaacgatggaagaaagctatgggcacagaggtgggtgcttcagaagaaaacgaaacatggacattagag aatcttccacctgggaaacgagccattgggagcaaatgggtctacaagatcaagtacaattcggacggca cgattgaacgttacaaggcaaggttggttgctcttggtaacaaacaaattgaaggtgaaggctatggaga aacgtttgctccagtagctaaaatgggtacgattcgtttgtttttaaaggttgcagctgggaatgattgg ccggtttatcagatggacgtttacaacgcctttcttcacggagatcttgaagaagaggtgtatatgaaac caccacctggtttttatccaaaagatgagcagaaagtttgtcggttaagaaagttaatatatggccttaa acaagctccgaggtgttggttcgaaaaattcacatcatctcttcgtgactatgggtttcagcaaacacat gctgattattcgttgttcacctttgatagagatggtattcagattcgcttgctcatatacgtcgacgaca tgattcttaccggtaacaatgacgcatcattggaagaatttaaggtctatctctcctcttgcttcaagat gaaagatcttggtcctttaaaatactttctgggtatagaggtctctcgcaacaaatctgggttctatctg agccaacgaaaatacgctttggatattgtcaccgaaaccgacatgttagcctccaagcctgcctcatttc cgttggaacaaaatcaccaacttgctttatcaacgtcacctctgttggtcgatccgtctccatatcgccg cttaataggtcggtttatctacttggcaaccactcgacctgatttagctttttgtgttcatactctggcg cagtttatgcaacagccgcgtgaagatcattggcacacagctttgcatgttgttcgctacattaaaggta ccgctggtcaaggaatcctcttgagttctgccaatgattttaaggttaatgggtggtgtgattccgactg gtcgagctgtcctattactcgtcgttcagtgacggggtattttgttcagttgggacaatctccaatatca tggaagacgaagaaacaagacacggtgagcaagtaatccgcggaggctgaatacagagcaatatctcatc ttcgagatgaactattatggataaagaaggtacttctatcaatgggtgttcgtcatgatcaaccgatgaa cattttctgtgatagcaaagcagcgatctacataagtactaatccagtctttcatgaacgtaccaagcac atcgagaatgactgtcatgttgttcgtgtgaaatacaaaaaggaaccatgtctccacatcatgtttccac aactcaacagctagccgacatttttacgaaaccgttaggacgacaagcatatgagctatttcgcagcaag ctgggcattcttgatctccacgcaccagcttgggaggggg1