;ID ATCOPIA71_I DNA ; ATH ; 5188 BP ;XX ;DE Internal region of ATCOPIA71 copia-like LTR-retrotransposon. ;XX ;AC AC002354 ;XX ;DT 26-OCT-2001 (Rel. 6.2, Created) ;DT 26-OCT-2001 (Rel. 6.2, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW copia-like polyprotein; ATCOPIA71LTR; ATCOPIA71_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] ;RA Lin,X. ;RL Direct submission in GenBank (March 2000) ;XX ;RN [2] (bases 1 to 5188) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (August 14, 2001) ;XX ;CC ATCOPIA71 was identified originally by [1]. Its boundaries ;CC and a target site duplication were corrected by [2]. ;CC ATCOPIA71_I is an internal region of the ATCOPIA71 copia-like ;CC endogenous retrovirus flanked by the 1% divergent ATCOPIA71LTR ;CC long terminal repeats, and by a 5-bp target-site duplication. ;CC ATCOPIA71_I encodes well preserved remnants of the ATCOPIA71p ;CC copia-like polyprotein. ;XX ;DR Positions 78268 73081 Accession No AC002354 GenBank (rel. 124.0) ;XX ;SQ Sequence 5188 BP; 1472 A; 983 C; 997 G; 1736 T; 0 other; ATCOPIA71_I tggtatcagagcatctccgatcatgagttgttcttcgattgaaatcgttctcattcatcttctttgtttt cttttggattcatgttgtatcatctttctcgcgatttttcaattcatgttcgtgagagaaatctgagttt cttcttcgttttttttgaccttattgctttgattctctttatatcttcaatccggagcaatttctatcat cgtttgagctcaaatcaactatgggttcaacaccacttcgtccatcttttcttgatgcaacatcgaataa cttcaatcaccacaacgatgtcgatagacaatcggttatggatcattacgataatccgttcttcctccat agtactgatcatgctggtttacaactggttacagatcgattaacctctggtgcagatttccattcttgga gacgatcggtgaggatggcgttgaatgtgcgtaacaaattgggattcgtcgatggtacaatctctaaacc tcctcccaatcatcgtgattctggatcttggtcaaggtgtaacgatatggttgcaacttggttaatgaat tcagtgagtaaaaagataggtcagagtctattgttcatgtctactgctgaaggaatctggaataatttga tgagtagatttaagcaagatgatgcaccacgagtgtttgaaatcgaacaaagattgagtagtatccaaca aggatcgttggatgttagtgcttactatactgaattgataactctgtgggaagagtacaagaattacatt gagttacctgtgtgtacttgtggtaaatgtgagtgtaatgctgcagtactttgggaaagattacaacaaa gaagtcgggttactaagtttttaatgggactaaatgaagcttatgagcagactcgaaaacacattctgat gttgaagcctattcctagtattaaagaagcatataacattgtggcacaagatgcgtcaacgtgttgttaa accgatgatcaagacagacaatgttgcttttcagacttctgaatcttatgatggtaattcatatcagggt gaacagccagaatttgttgctgcttataatgcatatcgacctaagagtaatcgaccattgtgtactcatt gtgggaagttgggacacactcttcagacttgttttcaggttcatggttatccaccgggttacaagattcc gggtcaggggaatactcaaggtaataaggcttcatacaatcctcgtggtcagacagatttcaactcaaag ccagtcttcaggccacaggctaataacatgccagagcagagaacagttgccaatgtattcacaggacagc ttcctgctagtgacacagttccttattatccttctccggccatgaatgcagtcaatcttgatgtcagtag gttgacacaagagcaagctcaaacactaatcagtcagctaagttctcatgctcaagttcctgtttcagag tctctaactcctcaattccctactattactgaacatgggattatggctgttcaatcttcatctggtacag ttttcaatatctcttctaatcttagatatgagaataataatctcacatacaatcaccaatgtctctcttc tttacatactgctttgcctaatgatgcttggataattgatagtggagctactagtcatgtttgttgtgat ttttcaaaatttaaagagactagtttagtatctggaataacagtagcattacctaatggcattagtctcc ctatcactcatacatgcaccattcatttatctgattcattggttcttcacaatgctttgtttgttccatc atttcgttttaatttgattagtgtgagtactcttttacgagataataaatgttttgctcacttttatcct acatcatgttttttacaggagtgttctcggggatggatgattgggagtgctaatcttcatcacaatctct acatcctcaatcttcaatccctgaatacaccagttgcatcatctagtgtcatcaacttctgtggatcctt gtcagctgatgggaatctatggcaccaacgccttggtcatccctcaactgccaagttagaacttctctct gattgtctttctcttaataagtctgcattagctagtcctcatcattgttctgtgtgtcctttagctaagc agaagcgtctgtcttttccttttaataataatgtgtcttctaatccatttgacttagttcatttggacat atggggacctttttcagtagagtctatagaaggatataagtactttctaactgtagttgatgattgtact agagttacatgggtttaaatgatgaaatataaaagtgatgtgttacagatttttacaaacttcattaaac ttgttgatactcaatatcagataagaataaaagctattagaagtgacaatgctcctgaactgaaactaac tgaattgataaaagaaaatggcatgattcactatttttcttgtgcatatactccacaacaaaattcagtt gttggaaggaagcatcaacacttgttaaatgttgctcgtgcattgctttttcagtctaatgttcctatca tatattggagtgattgtgtttcgactgttgcattcttagtgaataggattccatctgtcttacttaataa tgtcacaccctatgagaagttactgaaaaagaaacctacatatgcatcattgaaaatttttggctgtcta tgttatgcaagtactttacaaaaagatcgtaacaagtttactctgagagcacaaccttgtgttttcttgg ggtatccctctggatacaaaggatacaaagtcttagatcttgattctaatgtcatttcgatcactaggaa tgttgtttttcatgaacaaatttttccttttcataataaagaaaaatatcaaactgatttcttttcacat accattctgccaaatcctgttccatttattagtgaatcatctcatccatcatctgaaacgattattcctg ctgcatctcatactcctgctgcatctgcatctgaaacaattgttcctgctgcatctcatactcctgatgc atctgcatctgaaacaattgttcctgctgcatctcatactcctgctgcatctgcatctgaaacaattgtt cctgctgcatctcatactcctgctgcatctgcatctaataatgaaatatctgaatcggttttacctgctg catctttgactgagatttttaaaacagcagttccctctacagtagtaaatgagacttatgataatgatgc atttgttcgtgacttgattgaaagtgaaaaaggaaatgttgcatcatcatcatcatcatcattacctcag agggagactaggttgcctaatgagaatgttcctgttatttcgaatattaaatctgtgtctttacctgttg aaaggactaagaggcagactagggctcctagttatttatctgagtatcattgtgcattagcacaaatttc tactccattaccatctaaccatactactccatatcctctatcatctgttcttagctatgacctttttaaa cccactttttgttcttatatcttatcttattccctggaaattgaactgaaaactttcaaacaagccatag tttctgacaaatggaaaggggctttaaatgaggagttacaggctatggaacagaacaagacatggagtgt tacatctttacctcctggaaaaaatgtggttggttgtaaatgggtcttcacgatcaaatacaactcagat gggactgtagagcgttacaaagctcggctcgttgcaaaagggtttactcaacaggaaggggttgatttta atgagactttttcgcctgttgctaaactcacaagtgtctagatgatgttaggcttggcagcaagagaagg ttgggagttgagtcaaatggatgtatctaatgcctttctgcatagtactttggatgaagaaatttacatg agcttacctcaaggctatactccaggtacttcagaacctttaccgccgaatgctgtgtgtagattacaca agtccatttatggcttgaaacaggcgtctagacaatggaatcaactttttacatctgtgcttctaactaa tggttttatatagtctcagtctgatactacattgtttgtgaagtttacggagactagcttcatagctttg ttggtttatgtggatgatatagctattgctagtaacaatgctgatgatttgaaatctttgaagatggttt tagcaaaggcttttaagataaaagatctaggtcagctgaggttctttttaggcttggagatagctagaac ttcaaaaggaatatctgtttgccagagaaaatacacgttggacttattagaagatgctggtcttcttgcg tgtaaacctagtgtagtacctatggatccctatgtcaccttgagtaaagacacaggagttccattggtat ctgctacgccatttagagagcttattggcaggttgttatatttgacgataactagacccgacattgctta tgcggttcacaagttaagtcagtttattcaagctccaacagatgttcatttacaagctgcacataggatt cttaagtatctgaaagatagtccaggacagggacttttctattctgcaacgactgatttgtgcattaatg cttttgctgatgctgattggggtacatgtcctgatagtagaagatcagtctctgggatttgtgtttactt aggcacttcgttgatttcctggaagtctaagaagcagcaagtggcaaggagaagtagtacagaggcagag taccgaagtctagctgatgttactcgtgagattctatggatacaacaactattgaaagatttcagagtga ctgtgactgcaactgccaaagtcttttgtgataacaagtctgctatctatattgctacaaaccctgtgtt ccatgaaagaaccaaacacatagaaatcgactgtcacacaacgagagaccaaatcaagcttggaaacttg aagctgctacatgttacaagtgagaaccaactggcagatattctcaccaaaccgctgcatactcgaatct tttattctttacttactcgaatgtctttgtcaaaccttttcaatcctactgttttggattcaaaggtttg cgggggtg1