;ID ATCOPIA6I DNA ; ATH ; 4480 BP ;XX ;DE Internal region of ATCOPIA6 LTR-retrotransposon. ;XX ;AC AF039372 ;XX ;DT 12-APR-1999 (Rel. 3.2, Created) ;DT 12-APR-1999 (Rel. 3.2, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW ATCOPIA6LTR; EVELKNIEVEL; ATCOPIA6I. ;XX ;OS thale cress ;XX ;OC Arabidopsis thaliana ;OC Eukaryotae; Viridiplantae; Charophyta/Embryophyta group; ;OC Embryophyta; Tracheophyta; seed plants; Magnoliophyta; ;OC eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] ;RA Henikoff,S. and Comai,L. ;RT A DNA methyltransferase homolog with a chromodomain exists in ;RT multiple polymorphic forms in Arabidopsis ;RL Genetics (1998) In press ;XX ;RN [2] ;RA Henikoff,S. ;RT Direct Submission ;RL Submitted (19-DEC-1997) HHMI, Fred Hutchinson Cancer Research ;RL Center, 1100 Fairview Ave. N (A1-162), Seattle, WA 98109-1024, USA ;XX ;RN [3] (bases 1 to 4480) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (March 1999) ;XX ;RN [4] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA6 is a copia-like retrovirus; its ORF encoding copia-like ;CC polyprotein is not interrupted by any stop-codons; its LTRs are ;CC identical. We presume that ATCOPIA6 may be an active retroelement. ;CC Boundaries of ATCOPIA6I and ATCOPIA6LTR, originally reported by [1-2], ;CC have been changed [3] based on hallmarks of copia-like elements. ;XX ;DR Positions 7770 3291 Accession No AF039372 GenBank (rel. 109.0) ;XX ;SQ Sequence 4480 BP; 1158 A; 1268 C; 822 G; 1232 T; 0 other; ATCOPIA6I tggtatcagagcttgtcgatacctaaatctaaagaaaaaaaaaagaaaaaaaaattccctaccgccgctc tttcttcttctcttttccatctctctttttctctctcttctttcacgatgtctgattcaacctccccagt atctgtctccgagaccatcgccgtctccacttccaccttgctgaatgtcaacatgacgaacgtcacccgc ctcaccgattccaactttgttatgtggagtcgtcaggttcacgccctacttgatggttatgatctagccg gctacatcgacggatctatccccatcccaaccccgactcgcaccactgctgatggcgttgtcactaccaa caacgactatacactttggaagcgacaagacaagctgatttatagtgctctgcttggtgctatatctctc tctgttcagcctcttctctcgaaggcgaacacatctgcggagatctgggaaacgctttcctccacgtttg ctaatccgagttgggctcatgtccaacaattgcgtcagcagctcaaacaatggacaaaaggaaccaagtc cattgtcacctattttcagggttttacaacccgctttgatcatcttgcgctacttggaaaggctcctgaa cgtgaagaacaaattgagcttattcttggtggcctccctgaagactacaagacagtagtcgaccaaatcg aaggccgtgaaaatcctcctgctctcaccgaagtccttgagaagcttattaatcatgaagtgaagctggc agccaaagcagaagccacctccgtccctgtcactgcaaatgctgtcaactatcgtggtaacaacaacaac aacaacaactctcggagtaacggtcgcaacaactctcgtggtaacacttcatggcagaatagtcagtcca cctcaaaccgccaacaatacacaccacgtccctatcaaggcaagtgtcagatctgtagcgtccatggtca tagcgcacgtcgttgtccacaacttcaacaacatgctggttcatacgcctctaatcagtcgtcatctgcc tcttatgcgccatggcagcctcgtgctaacatggtttctgcgacaccatacaactccggcaattggctat tggatagtggagcgacgcatcacctcacttctgacctgaataatctcgctttacaccaaccgtacaatgg tgatgaagaggttaccattgctgatggttcgggtttgccaatctctcactctggttctgccttactccct actccaactcgctctcttgctttaaaagatgtcttatatgttccagatattcagaaaaatcttatctctg tttatcgaatgtgtaatactaatggagtatctgtggaattctttcctgcacactttcaggtgaaggatct cagcacgggggcccgattactccaaggcaagactaaaaatgagctgtatgagtggccggtcaattcttcc attgctacctccatgtttgcttcacccacaccaaaaacagaccttccatcatggcatgcaagacttggcc atccctctttacctattttaaaagcacttatttcaaaattttctttacccatttctcattctttgcaaaa ccaattgttatgttctgattgctctatcaataaaagccataaacttcccttttactcaaacactattgcc tcttctcatcctcttgaatatttatatactgatgtttggacctctcctattacttccatagataattaca agtattatctggtgattgttgatcattatacccggtatacttggctctatcctttacggaaaaaatcgca ggtccgtgaaatgtttatcacattcacagcattggtcgaaaacaaattcaaattcaagattggcacgctg tactccgataatggtggtgagttcatcgctatgcgctcatttcttgcctcccacggtatctcacatatga cgacaccaccacacacaccggagctcaacggtatctctgagcgcaagcatcgacacattgtcgaaactgg ccttactcttctaagcaccgcctccatgccaaaagaatattggagttatgcgttcgccacggccgtttac ctcattaatcggatgctaacacctgttctaggcaatgagtctccatacgtgaagttgtttggtcaacctc ccaactaccttaagcttcgaatttttgggtgcttgtgcttcccatggctgcgtccatacactgctcacaa gcttgataatcggtcagtgccgtgtgtgctccttggctactctttgtctcaaagtgcctatctatgtctc gatagagctactggccgtgtttacacctccagacatgttcagtttgctgaatcgagcttcccgttttcga ccacatccccttctgtcacacctccatcagatcctcctctctcacaagacacaagacccgtctcagtccc gcttcttgctcgtccactcactacagctccgccttcgtcgccctcgtgctcagctcctcaccggtcaccg tcgcagtccgaaaatctctcgccaccggctccgttacaaccatcactgtcattgtctccaacttcgccga tcacgtctccttcgttgagtgaagaatctcttgtgggccacaattcagaaacaggcccaactggttcttc tcctccactcagcccacagccacaacgcccacagccacaaagcccacaatccacaagcccacattcctca agcccacaaccaaatagcccaaatccacaacattccccacgttcgttaacacctacactcacgtcctcac catcaccctcacctccaccaaacccaaatcctccaccaattcaacacaccatgagaacacgatccaaaaa caacattgtcaaaccaaaccccaaattcgcaaaccttgctacaaaaccaactccactaaaacctataatt cccaaaaccgtggttgaggcgttacttgatccgaattggagacaagccatgtgtgatgagattaatgctc aaacacgaaatggcacgtttgatttggttcctccagcacccaatcaaaacgttgttggttgtaaatgggt ctttactttaaaatatttgtctaatggtgtacttgataggtacaaagcgcggcttgtggcgaagggattc catcaacaatatggtcatgactttaaggagacattcagtccagtgattaagtcaaccaccgtacggtctg tgcttcatattgccgtaagtaaaggatggagtatccggcaaattgacgtcaacaacgccttccttcaagg caccctatcggatgaggtatatgtgacacagcccccaggatttgtggacaaagataatgcccaccatgtg tgtcgtctctacaaagctctctatggtctcaaacaagctccacgtgcgtggtaccaagaattgcgctcgt atcttcttacacaaggcttcgtcaactctgtcgccgacacgtctctattcactcttcgtcacgagcgcac catactctatgttctagtttatgtggacgatatgctcatcactggcagtgacacaaacatcatcacgcgg tttattgctaatcttgcagctcggttttcacttaaggatctaggggaaatgagttattttctcgggattg aagcaactcgcacatccaaaggacttcacctaatgcaaaaacggtatgttcttgatctgttggagaaaac taatatgcttgctgcacatccggttctcactccgatgtccccgactccaaagctatcgcttacctcaggc aaaccacttgacaaaccaagtgaatatcgggccgtgcttggtagtctccaatatctcttgtttacaagac cggacattgcctatgcggtgaatcgcttgtcacaatatatgcactgtccaaccgatcttcattggcaggc cgccaagcgcattcttcgatatcttgctggaacaccatctcatgggatcttcatccgagctgatacgcct ctcacactacatgcttactctgatgcggattgggccggtgatattgacaactacaactctaccaatgctt acattttgtatcttgggagtaatccgatttcatggtcatccaagaagcagaaaggtgttgctcgatcatc caccgaagcagaatatcgagcagttgcgaatgccacttccgagattcgttgggtatgctccctcctcact gaacttggcatcacattgtcgtcaccgccggttgtttactgtgacaatgtaggtgctacatacctatctg ctaatccggtattcgactcacgaatgaaacatatagcacttgatttccactttgttcgtgaaagtgtcca agctggagctctccgtgttactcatgtctctaccaaagatcaactcgcagatgccttgacgaagcctcta ccacgacaaccgttcactactctcatttccaagattggtgttgctaaagcacctccatcttgagggggcg 1