;ID ATCOPIA69_I DNA ; ATH ; 4270 BP ;XX ;DE Internal region of ATCOPIA69 copia-like LTR-retrotransposon. ;XX ;AC AL161502 ;XX ;DT 05-NOV-2001 (Rel. 6.2, Created) ;DT 05-NOV-2001 (Rel. 6.2, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW copia-like polyprotein; ATCOPIA69LTR; ATCOPIA69_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4270) ;RA Kapitonov,V.V. and Jurka,J. ;RT Internal region of ATCOPIA69 copia-like LTR-retrotransposon. ;RL Repbase Reports 1:(2) p. 24 (2001) ;XX ;CC ATCOPIA69_I is an internal region of the ATCOPIA69 copia-like ;CC endogenous retrovirus flanked by the 4% divergent ATCOPIA69LTRs ;CC and a 5-bp target-site duplication. ;CC ATCOPIA69p, a 1348-aa copia-like polyprotein encoded by ATCOPIA69_I ;CC is free of false stop codons and frame-shifts. ;CC ATCOPIA69p: ;CC MSSTKLKISQFDGSGDFSLWKTRMFSHLRVMGLKDALVEQEQLPPLKDEEESDPAKKKQRIDEEKARIDR ;CC DEKAMDMIFINVGDKVLRNIENSKTAAEAWATLDRLYLVKSLPNRVYLQLKVYNYRMQDSKTLEENVDEF ;CC LKMISDLSNLQIQVPDEVQAILILSALPDSYDMLKETLKYGREGIKLDEVISAAKSKELELRDSSGGSRP ;CC VGEGLYVRGKSQAGGVGNKSTEGKKVCWICGKEGHFKRQCYKWLEKNKGNSAGETALVKDDAQDLVGLVA ;CC SEVNISEDKNDQEEWIMDTGCSFHMTPRKEYLINFEKAKSGKVRMANNSYSEVKGIGSVRFVKKDGTSIV ;CC LQGVRYIPEISRNLISMGTLEAEGYEFKGNHGILRVMQDSNEFIRGRRRASLYILEAQAEMANSESLVTT ;CC TGETDQTQLWHSRMGHIGQQAMDILSKKGCFGNDKISEIKFCEDCVIGKTHKVSFGTAQHTTKEKLDYVH ;CC SDLWGSPNVPYSLGRCQYFISFTDDWSRKVWIYFLKTKDEAFQSFTEWKTMVETQSERKLKHLRTDNGLE ;CC FCNHKFDGICKKEGIVRHRTCTYTPQQNGVAERLNRTIMNKVRSMLSESGLDKKFWAEAAATSVYLINRS ;CC PSSALENKIPEELWTSAVPSLSGLKRFGCIVYVHSQEGKLDPRAKKGVFLGYPQGVKGFRVWMIDEEKCS ;CC ISRNVVFREDVMYKDILNKLTSGMSLELPFVTNKVPSFECTGLNKDGERLVQGGAIEKESDETLELSNTD ;CC QEDTGTERIQRTHQIARDKPKRQIVIPSRLKDYEMNEEILDEIAGYAYLITEDGGNPEPTDFQEVLQDPD ;CC NKKWLEAADEEIESLIKNKTWTLVDRDNSQKPIGCKWIFKRKAGIAGVEQPRFKARLVAKGYAQKEGIDF ;CC QEIFSPVVKHVSIRLLLSMVVHLNMELQQMDVKTAFLHGYLDETIYMDQPEGYIHEKYPDKVCLLKRSLY ;CC GLKQSPRQWNNRFNEFMQRIGYERSKYDSCVYYKILLSGDYIYLLLYVDDILIASKDKEQVCELKTLLNS ;CC EFEMKDLGDAKKILGMEITRDRQAGTLTISQEGYLLKVLKDFGMDQAKSVNTPMGIHFKLKPANDEEVQK ;CC QSEVMRAIPYQSVVGSLMYSMISTRPDLAHSVGLVCKFMSKPLKEHWQAVK*ILRYISGTLDRKLCYKNE ;CC GECILEGYCDSDYAADKGSRRSTSGVVFTFGGNTISWKSNLQKVVALSSTEAEYMALTDAAKEAIWLKGL ;CC VNELGFTQKTVNIHCDSQSAIALAKNAVYHERTKHIDVKYHFIRDLVNNGEVQVLKIDTEDNPADIFTKV ;CC LPVSKFQDALELLRVSQN ;XX ;DR Positions 133749 129480 Accession No AL161502 GenBank (rel. 124.0) ;XX ;SQ Sequence 4270 BP; 1487 A; 677 C; 1056 G; 1050 T; 0 other; ATCOPIA69_I aattggtatcagagcccaggttctgagctcaagaatttcagatcgattcaaggatgtcgaacacgaaact gaagatttctcagttcgacggatcaggcgacttctcactatggaagatgggattaaaagatgcgctggtg gaacaaactaagtcatcttcattgacagatgaagaagaagacgatccagcaaagaaaaaaaagattctcg aagaggaaaaagcaagaattgatcgagatgagaaagcgatggatatgatcttcataaatgtcggagataa agttctgagaaacatagaacattcaaagacagccgcagaagcatgggcaactcttgataaattgtatttg gtaaagactctaccaaaccgtgtttaccttcaactcaaggtttacaactatagaatgcaagattcaaaaa ctcttgaagagaacatagatgagtttctaaagatgatatcagatctaagtaatctttagattcaagttcc agaagaagtccaagcaatcttgattctaagtgctttaccagaaggctatgatatgcttaaggaaaccttg aaatatggaagagaaggcataaaacttgatgacgttgtgagtgctgcaaaatcaaaggaactagaactaa gagatggtttaggaggatcaagaccggttggtgaaggtctctatgtaaagggaaagtttcaggccaaagg aagtgataacaacaaagggaataactcaacagaaggaaagaaagtctgttggatatgtgaaaaggaaggt cacttcaagagacaatgttacaagtggcttgagaagaataagggaaatggtgcaggggaaacaacattgg taaaggacgatgctcaagacttggtcgggctagtagcatcagaagctaacctaagtgaggataagagaga tcaagaagaatggataatggacactgggtgctctttccacatgacacctaggagagactatcttgtagac tttgtagaaggcaaagcaggaaaggttagaatggctaataattcattctctgaagtaaaaggaattggaa aggttaagttcacaaatgaggatggaagacagatcatccttcatggagtgaggtacatcccagagatatc tagaaatctgatctctatgggaactcttgagtcagagggatatgagtttagaggaggtaacggtgtctta aaggtaattcagggatcataagtgttcatgaaaggagtcagaagagcctcgttatacattttacaagcgg aagcgagaaagtcagatgcagactctcttacaacagtctcaggtgaatcagatcagactcagttatggca tagcagaatgggacatataggacagcaggctatggaagttttgagtaagaaaggttgctttggtaatgac aagatatcagagataaagttttgtgaagactcataatagggaagactcacagagctagtttcggatcagc acaacatgtaactaatgagaaacttgactatgttcattctgatctatggggatctcctaacgtaccgcac agtcttggaaaatatcagtacttcatatcatttacagatgactggtcaagaaaggtttgggtgtactttc tcaagtctaaagatgaagcctttgcttcattcactgaatggaaaaagatggtggagactcaaagtgacag aaaactcaagaaattaagaacagacaacgggttagaattctgtaatcaaaagtttgattgtttctgcaag aaggaagggagagtaagacatagaacatgtacttacactccacagcaaaacggagttgcagaaagattaa atagaacaatcatgaacaaggttagaagtatgctgagtgaaagtggcttagacaagaaattttgggctga agcagtttcaacctcagtatacttgattaacaaatcaccatcatctacaatggagaataaaatccctgaa gaactgtggacctcagtgatttccaatctgtcaagactaagaagatttggctgcattgtatacgttcatt ctcaagaaggaaaactggatcctagagccaagaaaggagtgtttgtgggttatccaagtggagttaaggg ttttagagtctggatgattgaggaagagaagtgcaccataagtcgaaacgttgtgttcagagaagatgtg atgtacaaggacatcatgaacgccacaacctcatgtataagtcttgaactccctttgactactaataaag ttcccatcttcgaatgtgcaggtgccagtaaaaccagagacagttcagatcatggtggagctacagagag tatttctgatgagactacagaaatcattgacattgatcaggtagacactacaccagaaggaaatcagaga acaagacagatagctcgagatcgacctaaaagacaagtgattatcccatcaagactcaaggattatgaga tggatgaggaagtattagatgagattgcaggctatgcttacctcataacagaggatgggggaaattctga acctgagtgctatcaggaagcagttcaagaccctgatagtgagaaatggttagaagcagctgatgaggag atagaatctctgataaagaataagacatgggttcttgtagagagaaacagtctacagaagcctattggat gtaagtggatattcaaaaggaaagctggaattgcaggagtggagaaaccaaggtttaaggctaggcttgt agctaagggatactcacagaaagagggaatagactttcaagaaatattttcaccagtggtgaaacatgtc tctattcgcctcctgctatcaatcgttgctcacctagacatggagttacaacagatggatgtaaagacag cctttttacacggctacctggatgagacgatctatatggagcaaccagagtgatatactcatgaaagata tccagacaaagtttgcttactgaagaagtcgctgtatggactgaagcagtctcctagacaatggaacaac aggttcaatgagtttatgcagaagattggatatgaaagaaacaagtatgatagctgtgtttacttcaaga tgttgcagagtggagagtacatctacttgcttctatacgttgatgatatactaatagcatctaaggataa aaaggaggtatgtgagttaaaggttcttctaaactctgaattcgaaatgaaagacttgggggatgctaag aaaatcttaggtatggagatcgtcagagatagacaagctggaactctctccatttctcaagagggctatc tcctgaaagttcttggagattttggcatggatcgagccaagacagtcaacacaccctggggatccatttt aaactgaaacctgcaactgatgaagagattcagaaacagtcagaagtcatgagaacaatcccttatcaaa gtgcagttgggagcttgatgtactcaatgattggtacaaggccagacctagctcattcagttggtgtagt atgcagattcatgagtaaaccattgaaggaacactggcaggcagtaaagtggatattaagatacattggt ggtactttagaccgaaagctgtgctataagaatgaaggagagctagtcttagaaggttattgtgactcgg actatgctgcagataaggaaacaaggagatccacttcaggagtggtgtttacctttggtggaaacacgat aagctggaagtcaagcttacagaaagtagtagctctatcaagcactgaagctgagtatatggctctaact gatgcagcaaatgaagcagtttggctgaaaggtcttgtaagtgagttaggttttgcacaaggatcagtaa acatccattgtgactcacagagtgctattgccttgactaagaacgcagtctaccacgaaaggaccaaaca tattgatgttaaatatcacttcatcagagaattggtgaacgatggtgtggtgcagatattgaagattgac actgaagacaatccagcagatatattcaccaaagtgctaccagtgagcaagtttcaagacgctcttgact tgctcagagtatctcaaagttaaggtggagctttgctccgggttttaagctgagtgggtttactcaggga gaagaagctgagtgggtttactcagggagaagaagctgagtgggtttactcaggaaaaagaagctgaaca agttagttcaggtaccggagaggaattcaaaagctaaaggcagcagagcataaagatcaaggtggagatt 1