;ID ATCOPIA65_I DNA ; ATH ; 4165 BP ;XX ;DE Internal region of ATCOPIA65 copia-like LTR-retrotransposon. ;XX ;AC AB025639 ;XX ;DT 05-NOV-2001 (Rel. 6.2, Created) ;DT 05-NOV-2001 (Rel. 6.2, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW copia-like polyprotein; ATCOPIA65LTR; ATCOPIA65_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4165) ;RA Kapitonov,V.V. and Jurka,J. ;RT Internal region of ATCOPIA65 copia-like LTR-retrotransposon. ;RL Repbase Reports 1:(2) p. 18 (2001) ;XX ;CC ATCOPIA65_I is an internal region of the ATCOPIA65 copia-like ;CC endogenous retrovirus flanked by the 1% divergent ATCOPIA65LTR ;CC long terminal repeats, and by a 5-bp target-site duplication. ;CC ATCOPIA65_I encodes well preserved remnants of the 1374-aa ;CC copia-like polyprotein ATCOPIA65p. ;CC ATCOPIA65p: ;CC MSEIVEATSKGKEGGGSASIQCPMLNSVNYTVWTMRMEAVLRVHKLWGTIEPGSADEEKNDMARALLFQS ;CC IPESLILQVGKQKTSSAVWEAIKSRNLGAERVKEARLQTLMAEFDKLKMKDSETIDDYVGRISEITTKAA ;CC ALGEDIEESKIVKKFLKSLPRKKYIHIVAALEQVLDLKTTTFEDIAGRIKTYEDRVWDDDDSHEDQGKLM ;CC CVKTXSQDGKLMYANSDSQGQYEFQDRGRGRGRGRFGRGRGRGYQQRDKSKVTCYRCDRLGHYASDCPDR ;CC LLKLIRLQEQKEKEEDDTHEAESLMMHEVVYLNEKNIRPTELESCINNAWYLDNGASNHMTGNRAWFCKL ;CC DEMITGKVRFGDDSCINIKGKGSIPFISKGGERKILFDVYYIPDLKSNILSLGQATESGCDIRMREDYLT ;CC LHDREGNLLIKAQRSRNRLYKVSLEVENSKCLQLTTTNESTIWHARLGHISFETIKAMIKKELVIGISSS ;CC VPQEKETCGSCLFGKQARHSFPKATSYRAAQVLELIHGDLCGPISPSTAAKKRYVFVLIDDHSRYMWSIL ;CC LKEKSEAFGKFKEFKALVEQECGAIIKTFRTDRGGEFLSHEFQEFCAKEGINRHLTAPYTPQQNGVVERR ;CC NRTLLGMTRSILKHMNMPNYLWGEAVRHSTYLINRVGTRSLSNQTPYEVFKHKKPNVEHLRVFGCVSYAK ;CC VEVPNLKKLDDRSRMLVYLGTEPGSKAYRLLDPTKRRIFVSRDVVFDENRSWMWQESSSETDKESGTFTI ;CC TLSEFGNNGVTENDISTEPEETEEAEINGEDENIIEEAETEEHDQSQEEPQPVRRSQRQVIRPNYLKDYV ;CC LCAEIEAEHLLLAVNDEPWDFKEANKSKEWRDACKEEIQSIEKNRTWSLVDLPVGSKAIGVKWVFKLKHN ;CC SDGSINKYKARLVAKGYVQRHGVDFEEVFAPVARIETVRLIIALAASNGWEIHHLDVKTAFLHGELREDV ;CC YVSQPEGFTNKESKEKVYKLHKALYGLRQAPRAWNTKLNEILKELKFEKCHKEPSLYRKQEGENILVVAV ;CC YVDDLLVTGSNLDIILNFKKGMVGKFEMSDLGKLTYYLGIEVLQSKDGITLKQERYAKKILEEAGMSKCN ;CC TVNTPMIASLELSKAQDEKRIDETDYRRNIGCLRYLLHTRPDLSYNVGILSRYLQEPRESHGAALKQILR ;CC YLQGTTSHGLYFKKGENAGLIGYSDSSHNVDLDDGKSTGGHIFYLNDCPITWCSQKQQVVTLSSCEAEFM ;CC AATEAAKQAIWLQELLAEVIGTECEKVTIRVDNKSAIALTKNPVFHGRSKHIHRRYHFIRECVENGQIEV ;CC EHVPGVRQKADILTKALGKIKFLEMRELIGVQGVSKEDFKLKRE ;XX ;DR Positions 13692 17856 Accession No AB025639 GenBank (rel. 124.0) ;XX ;SQ Sequence 4165 BP; 1476 A; 708 C; 961 G; 1020 T; 0 other; ATCOPIA65_I tttggtatcagagcatctaggtttgatattgaaacacaaacatgagtgaaatcgttgaagcaacaagcaa aggtaaagaaggtggaggatcagcgtcgatccaatgtccgatgctaaactccgtcaactatactgtatgg accatgaggatggaggctgtgcttagagtacacaaactttggggaacaattgaacccggatcagccgacg aagagaagaatgatatggctcgggctttgctctttcaatccatacctgagtcgttaattttacaagttgg taaacaaaagacttcttcagctgtctgggaagccataaaatcaagaaatcttggtgcagaacgagtaaaa gaggcgagattacagacacttatggcagaatttgataagctgaagatgaaggatagtgagacgattgatg attacgttggtaggatctcagagattactacaaaagctgcagctttaggagaagatatagaagaatccaa gatcgttaaaaagtttctcaaaagtttgccaagaaagaaatacatacacattgttgcagccttagaacaa gttcttgatctgaaaacaactaccttcgaagacattgcaggaagaatcaagacttatgaagacagagttt gggacgatgatgactcacatgaagaccaaggcaaacttatgtgtgttaaaacataatcacaagatggcaa actcatgtatgcaaattcggattcacaagggcaatacgaatttcaggacagaggtagaggaagaggtcgt ggacgatttggaagaggaagaggaagaggttatcaacaaagagataaaagcaaagtcacatgttataggt gtgatagactcgggcactatgcctctgattgtccagaccgtcttctcaagctgatccgactccaagaaca gaaagaaaaagaggaagatgacactcatgaagcagaatcacttatgatgcatgaggtggtatatctcaac gagaagaatattcgcccaacagagttagaatcgtgtattaacaatgcttggtatcttgacaatggtgcta gtaaccatatgacgggaaatcgtgcttggttctgtaagcttgatgagatgatcacagggaaagtaaggtt cggtgatgattcatgcatcaatataaaaggaaagggttcgattccttttattagtaaaggaggtgaaaga aaaatactatttgatgtttactacataccagacttgaagagtaacatcttaagtttaggacaagcaactg aatcagggtgtgacatcagaatgagagaagactacttaaccttgcatgatcgagaaggaaatctactaat aaaggcgcagcgatcaaggaacagattatataaagtgagtctagaagttgaaaactccaagtgcctgcag ctcacaacaacaaatgaatcaacaatatggcatgccagactaggacacatcagttttgagaccattaaag ctatgataaagaaagaacttgttattgggatatctagctcagttccacaagaaaaggaaacatgcggttc ttgtttgttcggaaaacaagctagacattcattcccaaaagcaacttcttatcgtgcagcacaagtactt gaactcatccatggtgatctctgtggacctatttcaccatctacagcagctaagaagaggtatgtatttg tattgattgacgatcattcacgatacatgtggtctattctactaaaggagaaaagtgaagcgtttggaaa gtttaaagagtttaaggcactagttgagcaagagtgtggggctatcatcaagacattcagaactgataga gggggagagttcttatcacacgaatttcaagagttttgtgcaaaagagggaatcaatagacacttaactg caccatacacgcctcagcagaatggagttgtggagagaaggaacagaacactcctaggaatgacaagaag tattctcaaacacatgaacatgccgaattatctttggggagaagctgtgagacattcgacttatcttata aacagagttggaacaagatcactttcaaatcaaacaccttatgaagtctttaaacataagaagccgaatg ttgaacatttaagagtgtttggttgtgttagctatgctaaagtcgaagttccaaatctgaagaaattgga tgataggtctcggatgcttgtttatcttggtacagaacctggttctaaagcgtatcgactacttgatcca acaaaaagaagaatctttgtgagcagagatgtcgtctttgatgaaaacagaagctggatgtggcaagaat caagctcagaaactgacaaggaatcagggacattcacaattaccttaagcgagtttggaaataatggagt cacagagaatgatatctctacagaaccagaagaaacagaagaagctgagataaatggagaagatgagaat atcattgaagaagcagaaactgaagagcatgatcaatctcaagaagaacctcaacccgtaagaagatcac aaagacaagtaatccgacctaactacttgaaagactacgtgttatgtgcagaaatcgaagcagaacacct tttacttgctgtcaatgatgaaccgtgggacttcaaagaagcaaacaagtcaaaagaatggagagatgct tgtaaagaggaaattcaatcaatagagaagaatcgcacttggagtttggtcgatctccctgttggaagca aagcaataggagtcaagtgggtttttaaactgaagcataactctgatggcagcataaataaatataaagc aagactagtggcaaaaggatacgttcaacgacatggtgtagactttgaagaagtatttgctccggtggct cgtattgaaacagttcgtctcataattgctttagcagcctcaaatggttgggagatacatcatttggatg ttaaaactgcattccttcatggggaattaagagaagatgtctacgtctcacaacctgaaggcttcacaaa caaagaaagcaaagagaaagtctacaaactgcacaaagctctctatggattacgtcaagcaccccgggct tggaacactaagctaaatgaaattctcaaagagttgaagttcgaaaaatgtcacaaagaaccctcattat acagaaaacaagaaggcgagaacattcttgttgtagccgtatatgtggatgaccttcttgtcacaggctc taacttagacatcattctcaactttaaaaagggaatggttggaaagttcgagatgagtgacttaggtaaa ctcacatattatcttggtatagaggttctacaaagtaaagatgggattacgctgaaacaagaaagatatg caaagaagatcttagaggaagctggaatgagtaagtgtaacacagtcaatacaccaatgatagctagttt ggagctgtctaaagcacaagatgagaagaggattgatgagactgattacagaagaaatattggttgtctt cgttacttactccacacccgtccggatctctcttacaatgttggcatactgagtagatacttgcaggaac cgagagaatcacatggagctgcactcaagcaaatcctaaggtaccttcaaggaacaacttcacatggact ttacttcaagaaaggagaaaatgcaggattgatcggctatagtgacagcagtcacaacgtggacttagat gatggtaaaagcaccggaggtcatattttctatcttaatgattgtcccatcacatggtgttcacagaagc aacaagtggttacgctatcttcttgtgaagctgaatttatggcagccactgaggcagctaaacaggctat ttggctccaagaacttctggctgaagtcattggtactgagtgtgagaaggtaacaattcgagttgataac aagtctgctatagctctcacaaagaacccggtgttccacgggagaagtaaacacatccaccggagatacc atttcattcgggagtgcgttgaaaatggacaaattgaagtagaacacgttcccggagtaagacaaaaagc tgatatactaacaaaggctcttgggaagattaagttcttagagatgagagagcttattggagtacaagga gtgtcaaaagaagatttcaagcttaaaagggagat1