;ID ATCOPIA63_I DNA ; ATH ; 4071 BP ;XX ;DE Internal region of ATCOPIA63 copia-like LTR-retrotransposon. ;XX ;AC AP002064 ;XX ;DT 05-NOV-2001 (Rel. 6.2, Created) ;DT 05-NOV-2001 (Rel. 6.2, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW copia-like polyprotein; ATCOPIA63LTR; ATCOPIA63_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4071) ;RA Kapitonov,V.V. and Jurka,J. ;RT Internal region of ATCOPIA63 copia-like LTR-retrotransposon. ;RL Repbase Reports 1:(2) p. 12 (2001) ;XX ;CC ATCOPIA63_I is an internal region of the ATCOPIA63 copia-like ;CC endogenous retrovirus flanked by the identical ATCOPIA63LTR ;CC long terminal repeats, and by a 5-bp target-site duplication. ;CC ATCOPIA63_I encodes the 1348-aa copia-like polyprotein ATCOPIA63p. ;CC ATCOPIA63p: ;CC METTMQQVIPIFNGESYGFWKIKMITILKTRKLWDVIENGVTSNSSPETSPALTRERDDQVMKDMMALQI ;CC LQSAVSDSIFPRIAPASSATEAWNALEMEFQGSSQVKMINLQTLRREYENLKMEEGETINDFTTKLINLS ;CC NQLRVHGEEKSDYQVVQKILISVPQQFDSIVGVLEQTKDLSTLSVTELIGTLKAHERRLNLREDRINEGA ;CC FNGEKLGSRGENKQNKIRHGKTNMWCGVCKRNNHNEVDCFRKKSESISQRGGSYERRCYVCDKQGHIARD ;CC CKLRKGERAHLSIEESEDEKEDECHMLFSAVEEKEISTIGEETWLVDSGCTNHMSKDVRHFIALDRSKKI ;CC IIRIGNGGKVVSEGKGDIRVSTNKGDHVIKDVLYVPELARNLLSVSQMISNGYRVIFEDNKCVIQDLKGR ;CC KILDIKMKDRSFPIIWKKSREETYMAFEEKEEQTDLWHKRFGHVNYDKIETMQTLKIVEKLPKFEVIKGI ;CC CAACEMGKQSRRSFPKKSQSNTNKTLELIHSDVCGPMQTESINGSRYFLTFIDDFSRMTWVYFLKNKSEV ;CC ITKFKIFKPYVENQSESRIKRLRTDGGGEFLSREFIKLCQESGIHHEITTPYSPQQNGVAERRNRTLVEM ;CC ARSMIEEKKLSNKFWAEAIATSTYLQNRLPSKSLEKGVTPMEIWSGKKPSVDHLKVFGCVCYIHIPDEKR ;CC RKLDTKAKQGIFVGYSNESKGYRVFLLNEEKIEVSKDVTFDEKKTWSHDEKGERKAILSLVKINSQEQGG ;CC GNDLNAHIDQVSNAFNQLHISSRGVQNSHEEGEESVGPRGFRSINNLMDQTNEVEGEALIHEMCLMMAEE ;CC PQALEEAMKDEKWIEAMREELRMIEKNKTWEVVARPKDKNVISVKWIFRLKTDASGEAIKRKARLVARGF ;CC TQEYGVDYLETFAPVSRYDTIRTIMAIAAQQGWKLFQMDVKSAFLNGDLEEEVYIEQPPGFIEEKEEGKV ;CC LKLHKALYGLKQAPRAWYGRIDGYFIKNGFERSINDAAFYVKKTSKEILVVSLYVDDIIVTGSNVKEIER ;CC FKEEMKNEFEMTDLGELSYFLGMEVNQDDEGIFLSQENYAKKLLKKFGMQECKSVSTPLTPHGKIEEVLS ;CC EKLEDVTMYRSMIGGMLYLCASRPDIMYASSYLSRYMRSPLKQHLQEAKRVLRYVKGTLTYGIHFKRVEK ;CC PELVGFSDSDWAGSVEDKKSTSGYVFTIGSGAFCWNSSKQKTVAQSTAEAEYIAVCSAANQAIWLQRLVN ;CC EIGFKAEKGIRIFCDNKSAIAIGKNPVQHRRTKHIDIKYHFVREAQQNGKIKLEYCPGELQIADILTKPL ;CC NTTRFEVLREELGVTMKP ;XX ;DR Positions 66843 70913 Accession No AP002064 GenBank (rel. 124.0) ;XX ;SQ Sequence 4071 BP; 1487 A; 638 C; 989 G; 957 T; 0 other; ATCOPIA63_I tggtatcagagctatggagacaacaatgcagcaagttattccaatcttcaatggtgaatcgtatggcttt tggaaaatcaagatgataaccatcttgaaaacacggaagctgtgggatgttatcgaaaatggggttacgt cgaattcgtcgcctgaaacctcaccggcgttaactagagagcgtgacgatcaagtgatgaaggatatgat ggctcttcagattcttcaaagtgcagtttctgattcaatatttccgagaatcgctccggcatcaagcgca acagaagcgtggaacgctttggaaatggagttccaaggaagttcacaagttaagatgatcaatcttcaga ccttaagaagagaatatgagaatctaaagatggaggaaggtgaaaccataaatgattttacaaccaagtt gattaatctgagtaatcaactaagagttcatggagaagagaagtccgattaccaagtggttcaaaagatt ctaatctccgtaccacaacaattcgacagtatcgttggggtacttgaacaaacgaaagacctatcaactc tttctgtcacagaattgataggaacactgaaagcgcatgagaggcgtttaaatctccgagaagatcgtat caatgagggtgcgtttaatggagaaaagcttggctcaagaggagaaaacaagcaaaacaaaattcgccat gggaagaccaacatgtggtgtggcgtgtgtaaaaggaacaatcacaatgaggtagattgtttcagaaaga agagtgaaagcatttcacaaagaggtggaagctatgaaagaagatgctatgtgtgcgacaagcaaggaca catagccagagattgcaaacttagaaaaggtgaaagagcacatctaagtattgaagaatcagaagatgaa aaagaagatgagtgtcatatgctctttagtgctgttgaagaaaaagagatctcaacaattggagaagaaa cgtggttggtagatagcggatgcaccaatcacatgtctaaagatgttagacacttcatcgctttggatcg cagcaagaaaattatcatacggattggtaatggtggaaaggttgtgtctgaaggcaaaggagatataaga gtatccacaaacaaaggagatcatgtcatcaaagatgtactttatgtacccgaactagcaagaaatttgc ttagtgtctctcaaatgatatccaacgggtatcgagtcatctttgaagacaacaagtgtgtgattcaaga tttaaaaggaaggaagatcttagacatcaagatgaaggacagaagttttccaattatttggaaaaaatca agagaagaaacgtatatggctttcgaagaaaaagaagaacaaacagatctttggcacaaacgatttggtc atgtgaattatgacaagatagagacaatgcaaacgctgaagattgtggaaaagcttccaaagtttgaagt aataaaaggcatatgtgcggcttgtgagatgggaaaacaatcaaggaggagttttccaaagaaatctcaa agcaacacaaacaaaaccttggagcttattcattcggacgtgtgtggtccaatgcaaacggagtcaataa atgggagcaggtacttcctcacatttattgatgatttctcaaggatgacatgggtgtatttcttgaaaaa caagagtgaagtgatcacaaagttcaagatattcaagccttatgtggagaaccaatcggagagtcgaatc aaaaggcttagaacagatggaggtggagaatttctatcaagagaattcatcaaactatgtcaagagagtg gcatacatcatgagataacaactccttactctccacaacaaaatggtgttgcggaaaggagaaacagaac actcgtagagatggcaagatcaatgatcgaagagaagaagttatctaacaagttttgggctgaagctatt gcaacatcaacatacttgcaaaatagattgccatctaagtcactggaaaaaggagttacaccaatggaga tatggagtggaaagaaaccaagtgttgatcacttgaaagtttttggatgtgtatgttacatacacatacc ggatgagaagagaagaaagctcgacactaaagccaagcaagggatattcgtaggctacagcaatgaatca aaagggtatagagtgttcttgctaaatgaagaaaagatcgaagtgtcaaaagatgtgacattcgatgaga agaaaacatggagccatgatgaaaaaggagaaagaaaagcgattctatcgctagtcaagatcaattcaca agaacaaggaggagggaatgatctaaacgcccatatagatcaagtaagtaacgcattcaatcaacttcat atttcgagtagaggagtgcaaaactcacatgaagaaggagaagaatctgttggtccaagaggtttcagat caatcaataatcttatggaccaaacaaatgaagttgaaggagaggctcttatacatgagatgtgtctcat gatggctgaagaaccacaagctttggaggaagcaatgaaagatgaaaagtggatagaagccatgagagaa gagttgcgaatgatagagaagaacaaaacatgggaagttgtggcgagaccaaaagacaaaaatgtgatca gtgtcaaatggatctttcggttgaaaactgatgcaagtggagaagcaatcaaacgcaaagcaagattggt ggccagaggattcacacaagaatatggtgtggattatcttgaaacttttgcaccggtttcaagatatgat acaataagaaccataatggcgattgcggctcaacaaggatggaaactcttccaaatggatgtgaagtcag cgttcttaaatggagacttggaagaagaagtttacatagaacaaccaccaggtttcatagaagaaaaaga agaaggaaaagttcttaaacttcacaaagcgctatacgggttaaaacaagcacctagagcatggtatgga cgcattgatggatactttatcaagaatggttttgagagaagcatcaatgatgcagcattttatgtgaaga agacttcaaaggagatattggtggttagtctctatgttgatgacatcatagtcacaggaagcaacgtaaa agagattgaacgattcaaggaggagatgaagaatgagtttgaaatgacagacttaggagaactaagttac tttcttggcatggaagtaaaccaagacgatgaaggcattttcttatcacaagaaaactacgcaaagaagc ttttgaagaaatttggaatgcaagagtgcaagagtgtgtcaacgccattgacgccccacggtaaaataga ggaggtcttaagtgaaaagcttgaagacgttacgatgtatagaagcatgattggaggtatgttgtatctt tgtgcttctagaccagacatcatgtatgcgagttcttacttgtctcgctacatgagatctccattaaagc aacatcttcaagaagccaaaagggttcttagatatgttaaaggtactttgacatatgggattcatttcaa gcgagtagaaaaaccagaattggtgggattttctgatagcgattgggccggatcagttgaggacaagaag agtacaagtggctacgtctttacgatcggatcaggtgcattttgttggaattccagcaagcagaagacgg ttgcccaatcaacggccgaggcggagtacattgccgtttgctcagcagcaaaccaagcaatatggttaca aaggttggtgaatgagatcggtttcaaggcagagaaaggtataaggatcttctgtgataacaaatcagcg attgcaatcggaaagaatccagttcaacatcgtcggaccaagcatatcgacatcaaatatcatttcgttc gagaggctcaacagaatgggaagatcaaacttgagtactgtccaggagagttacaaatagctgacatatt gacaaagcctttaaacacaacaaggttcgaggtcttacgagaagagctaggcgtaactatgaagccatga tcaaggaggag1