;ID ATCOPIA5I DNA ; ATH ; 4464 BP ;XX ;DE Internal region of ATCOPIA5 LTR-retrotransposon. ;XX ;AC AC005966 ;XX ;DT 12-APR-1999 (Rel. 3.3, Created) ;DT 12-APR-1999 (Rel. 3.3, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ATCOPIA5LTR; ;KW ATCOPIA5I. ;XX ;OS thale cress. ;XX ;OC Arabidopsis thaliana ;OC Eukaryotae; Viridiplantae; Charophyta/Embryophyta group; ;OC Embryophyta; Tracheophyta; seed plants; Magnoliophyta; ;OC eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4464) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (March 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA5 is a low copy number LTR-retrotransposon that was inserted ;CC in A.thaliana genome several million of years ago since there is ;CC 97% nucleotide identity between its LTRs. Its ORF is slightly ;CC corrupted by several mutations. ;XX ;DR Positions 33022 28559 Accession No AC005966 GenBank (rel. 109.0) ;XX ;SQ Sequence 4464 BP; 1262 A; 1319 C; 750 G; 1133 T; 0 other; ATCOPIA5I tggtatcagagcattacgactctcagacctaaacttttttttttaacgccgcctcttcttcatacactct tcttcaagtctgtttcatttttcacgatgacttccacaccgtcgggatccacagaaacaattgctttctc tgaaacaccaacccttctcaatgtcaacatggcaaacatcacaaaactcactcccacgaattacatcatg tggaaccgtcaggttcacgctttgcttgatggatacgaccttgctggctacatcgacggatccgtcaccg caccatctgaaatgatcaccactgctggtgtttctgcggctaatcccgcctacaagttttggaagcgtca agacaagctgatttacagtgctatccttggcacaatcacgaccaccattcaacctctcctgtcaagatcc aacacggctgcagagatctgggagaaactcaaatccatttacgccacaccaagctggggccacatccagc aaatgcgtcaacacatcaaacaatggagcaaaggtacaaaaacaatcactgagtactttcaaggtcacac aacccgtttcgatgagcttgctcttcttggaaagccacttgaacatgctgaacagattgagttccttctt ggaggtctctcggaagattacaagtctgtggtcgaccaaacagagattcgtgacaagcctccaactctca ccgagcttctggagaagctcctcaaccgtgaagccaaactcatgtgtgctgctgcaacaacgccatcgct tcctgccactgctcatgctgcaaactacaaagggaactcgaacaacaatcaatacaacaacaacaatcgc aacaacaaatctcatggtcgcaacaacaacaactggcagcaaaatcaacctcaatagcgacagaaccagt acacaccaaaaccctatcaaggacgctgccaaatctgcagcattcatggacacagcgcacgtcggtgtcc tcagctccaaggtagcagctacaactcgcaacagtcaatcccagcctcaccattcacaccgtggcagcca cgagcaaatgcagctatagcctcaccatacaacgccaacaattggttactcgatagtggtgcgactcatc acatcacttctgacctgaacaatctctcccttcatcaaccatacactggcggtgaagatgttactattgc tgacgggtctggtttatccatttcccacaccggttcggctttaatttcaacaccctctcgctctcttgca ttgactgatgttttatatgtgcctaatattcacaaaaacctcatatcagtttaccgaatgtgtaacgcta acaaggtgtctgtggaattctttcctgcacattttcaggtgaaggatctcaaaacgggggtccaattgct ccaaggcaggactaaagacgagttgtacgagtggccggtgaatccacctaaaccgtcatcccacttcact acaaccactccaaaaaccgacctcacctcttggcattcacgccttggccacccgtctttatctactttaa aagttgttgtttcccaattttctcttcctgtttctaattctttgcaaaaacagttcaactgttctgattg ccttttgaataaaacacacaagcttccttttcatacaaacactattacctccactcaaccacttgaatat ctatacattgatctttggacatcaccaatagtgtccattgacaacttcaaatactatctcgttattgtcg atcactatacacgatactcatggttctacccgatcaagcaaaagtcacatgtcaaagatgtgttcatgac cttcaaagccttggttgcaaacaaatttcaacgtaaaatcattcatctctactcagacaatggtggtgag ttcattgctctccgctcctttctctcctcaaatggaatcactcatttaacgacaccacctcacacgcccg agcacaatggcatctctgaaaggaagcaccgccatatagtagaaactggtcttacacttcttggacaagc ctctatgccgaaatcatactggagctatgcattcaccattgccatatacctcatcaatcgaatgtcaagt gatgtcattggcggcatttctccatacaagcggctctttggtcaagcccccaactatctcaaacttcgag tgtttgggtgcctctgtttcccgtggcttcgaccgtatactacacacaagcttgatgatcgacctgctcc gtgtgtgtttctcggctactcacaaacccaaagcgcctatctttgcttgaatcgaaccaccggccgtgtc tatacatctcgacatgtccaatttgttgaaaatacctacccatttaccaaacccacactcgacccattca ccaaccttgaagaatcaaacaaccactccataaccacaacagtcccgtcaccgccgttcgtacagcttcc gtcggtaccaccccctacaagagatcctcaccagccgccgccttctcaaccggcgccgtcaccctctccg ctctcgccgccttccatgtcgtcaccggtcatgacatcgtcgccacaattctcgagcaatcgagactcaa cgacgctccatggagattattctcacgtggactatggcctatcatcaccttccaatccaccaggcccaat tacatcacctaccacctcaaaaagcccatctgagcccacttccagcccatcacactcaaaccaacccaat aaaactccaccgaattccccatcgtcttcttcctcttccccgactccaattccctctccatcaccacagt catcaaattccccacccccacctccacaaaatcaacattccatgagaacccgagccaaaaacaacataac aaaaccaataaaaaaacttacccttgccgccactccaaaaggtaaatccaaaatcccaaccactgtggcc gaagctctccgtgatccaaattggcgaaatgcgatgtcggaggaatttaatgcaggtctccggaacagca catatgacttggtcccgccaaaaccacaccaaaactttgttggtactcgttggatttttactatcaaata taatcctgatggctctattaacaggtacaaagcacggtttctagctaaggggttccatcaacaacacggt cttgattactccaacacatttagccccgtcattaagtccaccacagttcaaactgtccttgatattgcgg tcagtcgctcttgggatatacgacaactcgatatcaacaacgcctttttgcaaggccgtctaaccgagga tgtttacgttgcacaaccacccggtttcataaacccagacagacccaattatgtgtgtcacctcaagaag gcgctacatggactcaaacaagctccacgcgcttggtaccaagaattgcgtgggttccttctcacatgtg gcttcacgaattccgtcgctaacacctccttgtttatacgccaacataacaaagactacatatacatact tgtgtatgttgatgattttctcatcacaggaagtaactccaatcttatcgctcaatttattacatgtttg gctaatcgcttctctttaaaagatttgggccagctgagttactttcttgaaatcgaggcgacaaggacga aagcaggattacacttaatgcaacgtcggtatgttcttgacttacttaccaaaacaaagatgttggacgc caaaacagtctccactccaatgtcgccaacaccgaagctgacgctaacatctggcactcccattgacaat cccggaggataccgacaaatacttggcagcctttagtacctcggattcacaagacctgacattgcctttg cagtcaaccgtctctcacaatttatgcacaaaccgaccgatctacattggcaggccatgaaacgcgtact ccgttaccttgccgggactccatcgaatggtatttttcttcgcgccaaaaacccgttaacacttcatggc ttctcagatgctgattgggcaggtgataatgaggattatgtttccaccaacgcatacatcatataccttg gcggaaatcccatttcatggtcatccaaaaaacaacgtggcgtcgctagatcctcaaccgaagcagaata ccgtgcagttgcaaacgcaggctccgaaattcgatggtcatctcacttctcactgaatttggaataccat tgcccactactcccgtcatctattgcgataatgtcggagcaacatatctctccgccaatccagtttttta ttctcgtatgaaacacattgccttggactatcatttcatacgagacaatgttcaagctgggatactacgt gttgctcatatctccaccaacgaccaactcgctgatgctcttaccaagcctctctcccgccaacgtttca cagaaataaataacaagattggagtcatacaactgcctccatcttgaggaggtg1