;ID ATCOPIA53_I DNA ; ATH ; 4863 BP ;XX ;DE Internal region of ATCOPIA53 copia-like LTR-retrotransposon. ;XX ;AC AL161507 ;XX ;DT 05-NOV-2001 (Rel. 6.2, Created) ;DT 05-NOV-2001 (Rel. 6.2, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW copia-like polyprotein; reverse transcriptase; ;KW ATCOPIA53LTR; ATCOPIA53_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4863) ;RA Kapitonov,V.V. and Jurka,J. ;RT Internal region of ATCOPIA53 copia-like LTR-retrotransposon. ;RL Repbase Reports 1:(2) p. 4 (2001) ;XX ;CC ATCOPIA53_I is an internal region of the ATCOPIA53 copia-like ;CC endogenous retrovirus flanked by the 95% identical ATCOPIA53LTR ;CC long terminal repeats, and a 5-bp target-site duplication (AGAAT). ;CC The ATCOPIA53_I CDS, which encodes the ATCOPIA53p copia-polyprotein, ;CC is slightly corrupted by a few mutations. ;XX ;DR Positions 156380 161242 Accession No AL161507 GenBank (rel. 124.0) ;XX ;SQ Sequence 4863 BP; 1357 A; 957 C; 864 G; 1685 T; 0 other; ATCOPIA53_I tggtattagagcttttcccagcttcattcatcttcttctgcaaattttcttctattctctgataatttct cttgattctcttttgtttctcaatctttgtttcattctctatcgtttgatcggagaatttctttgatcgc gtttcattccgatcattttttcattttctggttttgttactcttcgcgatggctaatccagctccgacga gctccaatccttactcaaatccattgtgtcttcatgctgctgacaattcgggtgttaaatctcgttctcg acaagctcatcggtgaatcttactatcttacaaggcgtcgttctatcatcaaagctctcaacgctaaaag caagctcggattcatctatggaagtgtcgttaaacctccggaagatcacaatgactatggatcttagact cgctgtaacgatatggtatgtacctggattacgaactttgtttcaaaggatttaggatctggaatggtct atttttatgatgctcatctcttatggttgaaactagaaggtagatctaggcagagtaatttgtctaagat ctatagtgttcaaaaccaactagatcgtctacatcaaggatcattagatctcagtgcttattacactcgt cttacggttaccttcattagatctcagtgcttatcatgggaagaattgaagaattttgaagagttacctt cctgtacttgtggaaaatgcacttgcggttcaaatgatcgttggattcagttgtatgagaagcacaacat tgtcagattcttaatgcgtctcaatgaatcgtttattcaagcgcgtcgtcagattcttatgatggatcca cttccagaattcacaaatctctataacttcatctctcaagatgatcaacaaagaagttttaattcaatgc ctaccacagagaaacctgtttttcaagcttctataactcaacagaaacctaagtttttcaatcaacaagg aaaatctcgtcctctttgcacttactgtggtttattgggtcatactaatgctcgatgttataaacttcat ggatatcctccaggctacaaggttcctgttggtacatgctacaataatgacaaatcaagaggtcagcctt atccacataatggcattcacatggtttattctcaacctcccgaacagatgatgtattctctagaaaagct ccacagattcaatctatgattccatagagtcatcttatcacttacaatgggaactcatatgctccaattg ttcaagctaataacaatgctccatatgctctttataatcaagcttataatgggaattcgtatgctcctat ggctcagaactttgctggaaatcatattatctctgatggatcttcaatgtctgctggtaatgtgactagt gaatcgccaactgtaaatcattctgtcaatatgatgaattctggaagaggttttcttggtagtagttcac atggtagggaacaggttaatcagatggttactcaattgaacacacaacttcaaggttctccgtatcaagt tattcgaccaccaactgtctcgcaaaatcatggttctatctcagcacaaggtatgtcacctataccttct cactatatttctgctttcgaaccatgtcttataattccacaaaatacctggagtcttgatactagagcta gttgtcatatctgttgtgacttgagtttgttctgtaatgtctaccatattgatcacacgaatatcactct accaaataatatcaaaatttccattaacatagctgaaacagttaaactcaatgataggctcattcttcat cttgttttctatgttccttcttttcatttcaatcttattagtgttagttctttaacaaaaacaaataaaa aaaattcagtgcatttttatcataagaattgtttcattcaggatcatactcacgcatggacgattggtag atgagattagcccaatgatctttatctcttaaatcatcaacctccacctgatacataacatcatgctgca tcattcattcaacctgattcgcaactcatgttgcatcattcattgttgtttcacctaagctttggcatca gcgtctaggtcacccatctatgtcaagggttcaggctttatcttcaaatttacatattcctcagaaactt tctgaatttcattgtaagatttgtcatttgtcaaaacaaaaatgtttatcttttgtttctaataataaaa tttatgaggaacctttccctttgattcatattgatgtttggggtccttttcatattacttctgtcaaagg atatcgttaatttcttactattgtcgatgattgcactagaatgacatggatttatttcttgcgtttaaag agtgatgttacaacgatttttccagaatttttaaaacttgttcaaactcaatttggttgcacagtgaaaa gcataaggtctgataatgcacctgaattacaatttaaggacttactagcaacttttggcatttttcatta tcattcatgtgcatacacacctcagcaaaattatgttgtcgaacgtaatcatcaacatcttctgaatgtt gctagatctctttattttcaatcaaatattccacttgcatattggcctgaatgtgtttctactgctgcat ttcttataaatagaacaccaactcccaatttagaacacaagagtccttatgaggttctttataagaaatt acctgactataattctcttagggtgttttgttgtttatgttatgcatctacacatcaacatgaacgtcat aaatttactgaaagagctacaagttgtgtttttattggttatgaatctggttttaaaggatataaaattc tggatcttgagtcaaatactgtttctgttacacgcaatgttgttttccatgaaactatttttccttttat tgataagcatagtactcaaaacgtttctttctttgatgattctgttttacctatttctgaaaaacaaaaa gaaaatcgttttcaaatttatgattatttcaatgttttaaatcttgaggtttgtcctgtcattgagccta ctactgttccagcacacacacacacacgatccctcgctccattaagcactactgttactaatgatcaatt tgggaatgacatggacaacacgctcatgccccgcaaagagacacgtgctcctagttatctttcacagtac cattgctctaatgttctaaaagagccttcatcttctcttcatggtactgctcattctctctcttcccatt tgtcttacgataaactctctaatgagtatcgtctgttctgctttgccattattgctgagaaagaaccaac cacctttaaagaggcagctttgttgcaaaaatggcttgatgcgatgaacgtggagttggatgctcttgtg agtacttccaccagggaaatttgttctttacatgatggaaaacgtgccattggttgtaagtgggtcttca agattaagtataaatccgatggtactattgaacggtataaggctcgcttggttgctaatggctatactca acaagaaggagttgattacattgatacattcagccctatagctaagcttacttcagtcagattaattctt gctttagctgctattcataactggagtattagtcagatggatgttactaatgcttttctccatggtgatt ttgaggaggagatatatatgcagctaccacaaggttatacaccaagaaagggggagcttttaccaaagag acctgtgtgtcgcctagtcaagtccttatatggtctaaaacaagcttcacgtcaatggtttcacaagttc tccggtgttctaatacagaatggttttatgcaatctctctttgatccgactttgtttgtcagagttagag aagatacttttctggccctgttggtatatgtggatgatataatgcttgttagtaacaaggattctgctgt gatagaagtcaagcagatattagccaaggagttcaagctaaaagatttgggacagaagagatattttttg ggattggaaatagctcgctctaaggaaggtatctctatttcacagagaaaatatgctttggagttacttg aagagtttggctttcttggttgtaaacctgtcccaacaccaatggagctgaaccttaagctaagtcagga agatggtgccttacttctggatgcctcacattacagaaaactcattggaagattggtttatctcactgtg actcgaccagatatatgttttgcagtgaataaactcaatcagtatatgagtgctcctagggaaccacatt tgatggctgcacgtcgcatcttacgttatttgaagaatgatccaggtcaaggtgtgttctatccagcctc ttctactctgacttttcgtgcttttgctgatgctgattggagtaattgcccggagagtagcatatccatt tctatagtttgtgtgtttcttggagattccttaatctcttggaaatccaagaaacaagatgctgttagtc gcagtttggctgaagctgagtacagaagcatggctagtgctatctttgcctgacacaatttttgtgtact atgacgatgagtctgcacttcacattgctaagaactcagtcttccatgagagtaccaagaacttccttca tgatattcatgtggtgcgagaaaaggttgctgttggttttatcaagactcttcatgttgatactgaacac aacattgttgatctgctcactaagcctctcacagcgcttcggttcaattatctactgtccaagatgggac tgcatcacttgtactctccatcttgagggggag1