;ID ATCOPIA50_I DNA ; ATH ; 4278 BP ;XX ;DE Internal region of ATCOPIA50 copia-like LTR-retrotransposon. ;XX ;AC AL161517 ;XX ;DT 01-OCT-2001 (Rel. 6.2, Created) ;DT 01-OCT-2001 (Rel. 6.2, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW copia-like polyprotein; reverse transcriptase; ATCOPIA50LTR; ;KW ATCOPIA50_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4278) ;RA Kapitonov,V.V. and Jurka,J. ;RL Repbase Reports 1:(1) p. 10 (2001) ;XX ;CC ATCOPIA50_I is an internal region of the ATCOPIA50 copia-like ;CC endogenous retrovirus flanked by 3% divergent ATCOPIA50LTR ;CC LTRs and a 5-bp target site duplication. ;CC ATCOPIA50_I encodes well preserved remnants of the ATCOPIA50p ;CC copia-like polyprotein. ;XX ;DR Positions 100331 104608 Accession No AL161517 GenBank (rel. 124.0) ;XX ;SQ Sequence 4278 BP; 1423 A; 717 C; 1086 G; 1052 T; 0 other; ATCOPIA50_I aagtggtatcagaacgaaggttctttgtattggcggttcagtaaggttcttacaaacaaagaagccatgt cgtcagcaagggtagagatggagaagtttgatgggcatggagactacacattgtggaaggagaagctgat ggctcacatggatctgttgggtttaacggtggctctcagggaaacacagtcggtctcagatcctctagaa tctgaggaagaaggaaaagaatctgaaaaaggagataaggaagcactcatggaagagaagagacagaaag cgagaagcaccattgttttaagtgtctcagatcaagttttgcggaagagtaagaaagagaagactgcacc ttctatgttggaagccctagacaaactgtacatgtctaaggcacttccaaaccgcatttatctgaaacag aagctttatagctacaagatgcaggagaacttgtctgtagaaggaaacatagacgagtttctacgtctca tagctgatctggaaaacacaaatgtgttggtttcagatgaagaccaagctattctgctactgatgtcttt accaaagcagtttgatcaactgaaggatactctaaagtatggctcagggagaacaacactatccgtcgac gaagttgttgcagccatttactcaaaggagctagagttaggctcaaataagaagagtataagaggacaag cagagggcctgtatgtcaaagacaaaccagagacaagaggcatgtcagagcagaaagagaaagggaacaa aggacggtcaagatctagatctaaaggctggaaaggatgttggatctgcggtgaagaaggtcacttcaag acctcatgtcccaacaaagggaagcagcagaacaagggaaaagaccaagcaagcggtagtaaaggcgaag ctgcaacgatcaaaggaaacacatccgaaggttcaggctattatgtgtcagaagcattacattcaactga tgtaaatctggggaatgaatgggtcatggacacgggttgcaactatcatatgactcataagaaggaatgg ttcgaggagctgagtgaagacgctggagggacagtgaggatgggaaacaaatcaacctcaaaggtcagag gcattggaagtgtcaaaatcctgaacaaggatggaacaacagtttcgtgtaaagtacattcctgacatgg atcgtaatttactttctatgggaactctagaagaacatggttatagttttgagtcaaagaatggagtctt agtggtgaaagagggaactaggactttattgataggcagcagacatgaaaagctttacttactccaagga aagcctgaggttagtcattctatgactgttgaaaggagaaatgatgatacagttctgtggcacagaagat taggccatataagtcagaaaaatatggatattctggtcaagaaaggatacttagatggaaagaaagtttc taagttagagttgtgcgaagactgtatttatggtaaagctaggaggctgagtttcgttgtggctacacat aacactgaagacaagttgaattatgttcattctgatttgtggggagcaccatcggtccctctatccttag gaaaatgtcagtatttcatctcgttcatagatgtttactcaagaaaaacgtgggtttattttctgaaaca caaggatgaagcttttgggacctttgctgaatggagtgttatggtagagaaccaaacaggaagaaagatc aaaattctgaggatagacaacggtctggagttttgtaatcagcagtttaatgatttctgcaaggagaagg gtattgtgaggcatcagacatgtgcttacacacctcaacaaaacggcgttgcagagaggatgaatcacac aatcatggaaaaagtcagaagaatgttaagttattctggcttacctaagacgttttgggcagaagcaact aacactgtagtgactctaatcaacaaaactccctcatctgcagtcaactttgagatttctgacaagagat ggtcaggtaagtctcctgtttataactacttaaaaaggtttggttgtgtggcttttacttatgcagatga aggaaagctagtacctagagccaagaaaggagtgttcttaggctatctcagtggagagaaagggtacaag gtctggttgttagaagaaagaaagtgcagtgttagtagaaatgtgacatttcaagagaatgcagtctacc gagatgtgatgcagaagaacaaagactctgaggaagtggacacatcaagcaggtctcttgatattgatct tgaagatgttggtgatttgagcttaggtggagatctcttggaagaaacatgatccctgggagatcactca cctgctcaggaccatcaccacactgaagacgcggagatcaatgaagaaacggtacctgaaacaccaaaca gctaccatttggttagagacagagttagaagagaaatcagagctccaaaacgttttgatgtggagggtta ttacagtgagtttactgatgatgaagaagaatcatttaatgttgaagccttggtcaccacagtagatgga gacaccagagaacctggaattatcaagaagctctaagagatgatgattgagaactatggaaagtcggcat ggatgaagagatggactctctgttgaagaatcacacctggactgtagtaaagaagcctgttggagaaaga gtgataggctgcaaatggattttcaagcgtaagcctggaactcctggaattgaacaacctagattcaagg ctaggttagtttcaaaagggtatgcacaaagagaaggaatagactacacagatatcttctctccagtggt aaagcacgtttcaatacggatattgctggctattgttgcagaggagaattatgagcttgaacagctagac gtcaagactgcttttcttcatggagatctagaagaaaagattttcatggaagcaccagaaggttatgaaa gtcagttcaagcaaggagaagtgtgtctgttaaacaagaccatgtatggtctaaagcaatcaccaagaag atggaatcaaaagtttgatagttacatgctggaaatcggctttgagagaagccctcgtaataagtgtgca tacattaaatcacttgaggatggctcaaaggtctatctacttatctatgtcgatgacatgttggtggctg ctagagatatgcaggtcatttctgagttaaagcagaaactcagtgagaagtttgaaatgaaggatctcgg agctgctaagaggatacttggcatggagatctcaagagacagagttaagggaactctcacactgtcacaa gaagattacttgagcaaggttctggaaacatacaacgtggatcaatgcaagtttgtggtaacacctctcg gtgctcacctaaagatgcatgcggcaacagaacaacaactgctcagtgatgaagagtacatgaagtcagt gccttattcaaacgcagtaggaagcattatgtactctatgatcgatacaagaccagatttggcttattgt gttggcatcatcagtcggtttatgagcaaaccagttaaagagcactagttaggggtcaagtgagtactta ggtacattaaaggaaccctgaacatgaagttgtgctagaagaagggagcagacttaaccctcagagggta ttgtgactccgactatgctgcaaacctggagaacaggcgatcaataagcggaatggtattcacacttggt gggagcaccataaacttgagatcatgtctgcaaaaagtagtggtaatgtcatccactaaagccgggtata tgtctctcactgaagcagtaaaggaggctatatggcttaaaggtttgttacaggactttggctatgaaca gaagacggtggagattttctgtgattctcaaagcgccatagccctgtcaaagaacaatgtgcaccatgac aggacaaagcacattgacatcaaataccacaagatccgcgaggtcattgcagatggagtggtagaagtga agaagatatgcacactggtgaattcagctgatatcttcacaaaggttgtacccgttagcaagttcaagac agctttgcactcgctacgagtaaagactgagtaatctactcaggaccgggaaaggaatcctaaactataa caagttattctctctcaaaaaggtattctcgcttctgtcaattcgtgtttcatgttcttctattgctagg tggagatc1