;ID ATCOPIA46_I DNA ; ATH ; 4260 BP ;XX ;DE Internal region of ATCOPIA46 copia-like LTR-retrotransposon. ;XX ;AC AL161573 ;XX ;DT 01-OCT-2001 (Rel. 6.2, Created) ;DT 01-OCT-2001 (Rel. 6.2, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW copia-like polyprotein; ATCOPIA46LTR; ATCOPIA46_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4260) ;RA Kapitonov,V.V. and Jurka,J. ;RL Repbase Reports 1:(1) p. 4 (2001) ;XX ;CC ATCOPIA46_I is an internal region of the ATCOPIA46 copia-like ;CC endogenous retrovirus flanked by 1% divergent ATCOPIA46LTR ;CC LTRs and 5 bp-long target-site duplication. ATCOPIA46_I ;CC encodes well preserved remnants of the ATCOPIA46p copia-like ;CC polyprotein. ;XX ;DR Positions 179933 184192 Accession No AL161573 GenBank (rel. 124.0) ;XX ;SQ Sequence 4260 BP; 1178 A; 910 C; 867 G; 1305 T; 0 other; ATCOPIA46_I tggtatcagagctcagtcgaaaatggctgacaactctgattcatcttccgctctctgtttttctcattat gttactctgaaactctcaactgcaaactacctcttgtggaagatccagttcgagacttggctcaacaatc aacgtttgcttggttttgttactggtgctaatccgtgtcctaatgctacgagatctatcagaaatggaga tcaagttacagaagctacaaatcctgactttctcacatgggttcaaaatgaccagaaaatcatggggtgg ctccttggttcgttgtctgaagatgctctgcgttcagtctacgggttacacacatccagagaggtatggt tttctcttgctaagaagtacaaccgtgtctctgcctctaggaaaagtgacttgcaacgtcgtttgaaccc tgtctctaagaatgagaaatctatgcttgagtatctaaactgtgttaagcaaatctgtgaccagctagac tctattggttgtcctgttccagaaaacgaaaagatttttggggtcttgaatggtttaggtcaggaatata tgcttgtgtctacaatgattaaaggttctatggatacctatcccatgtcctttgaggatgttgttttcaa gctgattaattttgatgataagctgcaaaagtatgcagaggttcctaatgtttctcctcacttggcttat gctactgaatcaaactactcaaagtggtcaatctggtggaaatcgaggtcgcaacaactacaccactaaa gggagaggtttccctcaacaaatctcaagtggctctccctctgactcaggaacaagacctacctgtcaga tctgcaacaagtatggtcattctgcttataagtgttggaagcgttttgatcatgcttttcagagtgaaga cttcagtaaagcctttgctgcaatgcgtgtctctgatcagaaatccaatccttgggtgactgactcaggc gctacttcacacatcacgaactctacttctcagcttcagtctgctcaaccttacagtggagaagattcag ttattgttggcaacagtgactttctccccataactcacattggttcagcagttctgacaagcaaccaagg taatctgccactaagagatgttcttgtttgtcctaatatcactaagtctcttttatctgtgtctaagctt acctcagattatccttgtgtgattgagtttgactctgatggtgtgattgttaaggacaagctgacaaaac agctcctcacgaaaggaacccgccataatgatttgtacctgttggagaatccgaagttcatggcttgcta ctcttccagacaacaagctacaagtgatgaggtgtggcatatgaggctaggtcaccctaatcaagatgtt ctccaacaacttttaagaaataaagccatagttataagtaaaacaagtcacagtttgtgtgatgcttgcc aaatgggaaagatttgcaagcttccttttgcttcttcagattttgtttcaagcagactcctagaacgtgt ccactgtgacttatggggtcctgcaccagttgtttcttctcaaggttttcgatattatgtaatctttatt gacaattactcaagattcacttggttttatccattgcgcctcaaatcagatttcttctctgtctttctca cgtttcaaaagatggttgagaatcagtgtcaacaaaagattgctagttttcagtgtgatggagggggtga gtttatcagcaatcagtttgtttctcatcttgcagagtgtggaatcagacagttgatctcatgtccctac actcctcaacaaaatggtattgctgaaagaaaacatcgtcacattacagaacttggttcgtcaatgatgt ttcaaggcaaagttcctcagtttttgtgggtagaagctttttacacttcaaatttcctgtgcaaccttct tccatcctcagttctcaaagatcagaaaagtccatatgaagttcttatgggaaaggctccagtctacact tctcttcgagtttttggatgtgcctgctatcctaatctcagaccttatgcaagtaacaagtttgatccta aatcgttactatgtgttttcacaggttataatgagaagtacaagggatacaagtgttttcatccgcctac agggaagatatatatcaacagacatgttctatttgatgaatccaaattccttttttcagatatctatagt gacaaagtttcaggtacaaactcaactttagtctcagcttggcaaagcaactttctcccgaagagtattc ctgcaactccagaagtcttggatatctctaatactgcagcttctttcagtgatgaacaaggtgaattctc tggtgctgttggaggaggaggttgtgggtgtacggcggacttagattctgttcctataggcaacagtctc ccttcttctccagttactcagcagaattcaccacaaccagaaactcctatctcttctgcaggttcaggaa atgatgcagaagactcagagttgagtgaaaattcagaaaattcagaaagttcagtgttcagtgaagctac aacagaaacagaagctgctgacaacactaatgatcaaagtcatcctatgataacaaggtctaaatcaggc attttcaagccaaatcccaaatatgctatgtttacagtaaagagtaactaccctgtaccaaagacagtca aaacagctcttaaagaccctggatggactgatgcaatgggtgaagagtatgactcttttgaagaaacaca tacttgggatttggttccacctgactcgttcattactcctttaggctgcaggtgggttttcaaaacgaag ctaaaggctgatggaactcttgatagattaaaggctcgtcttgttgctaagggctatgaacaagaagaag gagttgattacatggagacttatagtccagtggttcgcacagccacagtgagaacaatcttacatgttgc aaccattaacaagtgggaaatcaagcaacttgatgttaaaaatgcctttttacatggtgatttgaaagag actgtgtacatgtaccaacctccaggttttgaaaatcaagacagacctgattatgtgtgcaagctcaaca aagccatttatggtcttaaacaagctccgagagcttggtttgacaagttcagtacttttctcttggagtt tggtttcatctgtacctattcagatccttctctgtttgtgtttctgaaaggaagagatctcatgttcctc ttgctctatatggacgacatgcttctcacaggcaacaatagtgaactgttggacacactgcttgtctctc tgaataaagagtccgcatgaaagacatgggaatgctgcattactttctcggaattcaggctcattttcac tgagaagggttgttcttgcatcaagagaaatatgctatggatctccttgttgcagcaggaatggcagatt gtgccccaatgccaacccctttgcctcttcaattggataaagttcctggtcaacaagaaagctttgctga tcctacttattttcggagcttggctggtaagttacaatatcttactcttactcgtcctgacattcaattt gcagtcaatcttgtgtgtcaaaagatgcattcccccacagttgctgatttcaatctcctcaaaagagtct tacgctatctcaaaggaaaagttcaaatgggtctcaacttacacaacaacacggatatcactttgcgtgc ttatagtgatagtgactgggcaaactgcaaagagactagaagatctgttggtggtttctgcacttttctt ggcactaacataatcagttggtctgcaaaacgtcatccaacagtctcaaggtcctcaacagaagctgagt ataggaccctctctatcgcagctacagaagtgaagtggatctcatctttgcttcgtgaaataggcatcta tcaacctgcaccaccggagttgtactgtgacaacctctctgctgtctacctcactgcaaatccagcaatg cacaaccggtctaaggcctttgatgttgattttcactatgttcgagaacgtgttgccttgggagctttgg ttgtcaaacatgtccctgcttctcatcaacttgcagacatcttcaccaagtctcttccccaacgtccatt ctttgacttaaggtacaaacttggcgttgttttacctcccacaccaagtttgagggggtg1