;ID ATCOPIA43LTR DNA ; ATH ; 570 BP ;XX ;DE Long terminal repeat from the ATCOPIA43 copia-like retrovirus ;DE - a consensus sequence. ;XX ;AC . ;XX ;DT 31-AUG-2000 (Rel. 5.8, Created) ;DT 31-AUG-2000 (Rel. 5.8, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; endogenous retrovirus; COPIA superfamily; ;KW long terminal repeat; ATCOPIA43I; ATCOPIA43LTR. ;XX ;OS consensus ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Charophyta/Embryophyta group; ;OC Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; ;OC Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; ;OC Arabidopsis. ;XX ;RN [1] (bases 1 to 570) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (August 2000) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA43LTR is a consensus sequence of a long terminal repeat ;CC from ATCOPIA43 copia-like endogenous retrovirus. ;CC Individual copies are ~97% identical to the consensus sequence. ;CC There are ~10 copies of the ATCOPIA43LTR in the genome. ;CC Solo LTRs are flanked by 5-bp target site duplications. ;XX ;DR [1] (Consensus) ;XX ;SQ Sequence 570 BP; 164 A; 79 C; 153 G; 167 T; 7 other; ATCOPIA43LTR tgaagaaacagagtgtctgaagttctacaggcgtgtctgaaacaacrcagagcagaacagaggaacagag gaagcgggaaagtagcagttgcttttgcsagcgtggcatgttgattggagtgaaggaaaggcgtatcact ttagacaaaggagacgaakkcgtcagacataggacgtgtgcctagtgtcaagataatgatgaggagctac acttgaacctgctggataaagtrgagcatcctgycttttccgagaaactacataagagaagttttggtct cttattagggttagccactttacttgagaaaagtggaagagaagaaaagttaagtagaacttgttcttgt gggtttcattggtgagtgaacaaagagagcacacggctgttgctgtgtttgtgagctgggtagtttttag gttctgacagtagcaaatcaggttgttgatgttgcataayactgtccaaacttatctgtgattgatcagt ttgaaagttgttctaataaagtgtgtttattggagttgtgttctttatcttgtcaaagtacttagggttc ttttacttca1