;ID ATCOPIA42LTR DNA ; ATH ; 1326 BP ;XX ;DE Long terminal repeat from the ATCOPIA42 copia-like retrovirus ;DE - a consensus sequence. ;XX ;AC . ;XX ;DT 31-AUG-2000 (Rel. 5.8, Created) ;DT 31-AUG-2000 (Rel. 5.8, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; endogenous retrovirus; COPIA superfamily; ;KW long terminal repeat; ATCOPIA42I; ATCOPIA42LTR. ;XX ;OS consensus ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Charophyta/Embryophyta group; ;OC Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; ;OC Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; ;OC Arabidopsis. ;XX ;RN [1] (bases 1 to 1326) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (August 2000) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA42LTR is a consensus sequence of a long terminal repeat ;CC from ATCOPIA42 copia-like endogenous retrovirus. ;CC Individual copies are ~95% identical to the consensus sequence. ;CC There are ~10 copies of the ATCOPIA42LTR in the genome. ;CC Solo LTRs are flanked by 5-bp target site duplications. ;XX ;DR [1] (Consensus) ;XX ;SQ Sequence 1326 BP; 368 A; 193 C; 328 G; 410 T; 27 other; ATCOPIA42LTR ttgagtcacacggctggtgaaakcaaacccggtttggctgcagtagtctgagaagtggttggtcatcaaa gtgttttacgatacactratwtcaggtaagtgtttctaactacttatcytgatgtagatcttctgtaact agttgtttttaacttagttgtgcactcaagcagggggagatgastctggtttatagaatgcttgattgtg ggggagtttgacwractgctgaytacttagtaatgttcatagttgactgatyacttgatragtattgttg actaattactagttgagtagtgttcactgtttatgggggagacttgtttsaatttrattcgttttaagtt tagacatagtttcactgcctgktrttrgaggagttcgttgttagaatycttctgagtgatgtgaacggtt aagaacttgatttycgytgctattgatkttttgcgttcttaacacagttctgatatgaacaagctttwat ctctagctagatattgcttkttctgtttctttttggttggtttgtttagtatcttttyaggttgarccag aaggatgcttgagtatcaaactaagtcaaaaagggggagattgaagatgcagattctgacaacaacgagc tgatggacatcagggagctgttggatatcaggaagctgcatcaaatctacatcaaacgtctgagttgctg acatggacgcgtgagctgacatggcggagctggagtggttgatgtgacgtgccaagaagctttgctgact tggcrtggtgatcaaagacgaaagtcggttgagaagatttggtgaatattcttctcaacaagttaaggaa agagataggcttgaatatcaaggaggatctcgaacaaggaaagagataggcttgaatatcaaggaggatc tcgaacaaggaaarggataggcttgacgattcaagaaagatyccgctcattgattctcggagatcctagg gattagggttagcgagaatagcataaatattctaggagtaggcattgagccgcctaagcactctagaata ttgccatacgtgtaaagctttcgaagcctagcaaaagcttagaaagtgggtgtttgtaatccctcctctt cacaggcgtgtgataagaaacagaggagtgattaggcttagatttgttcttagtcggggttgatcattcg ggtagaataggtcaagtaattgccgagataatagaatccttgtaaaagatttattatcaataagaacaag taaaaarcgtttgtttgacgcgtttcaaacaaaatcagcgtgttgtgtatcctctataccctctta1