;ID ATCOPIA40_I DNA ; ATH ; 4131 BP ;XX ;DE Internal region of the ATCOPIA40 LTR retrotransposon. ;XX ;AC AC007178 ;XX ;DT 16-DEC-1999 (Rel. 4.0, Created) ;DT 16-DEC-1999 (Rel. 4.0, Last updated, Version 2) ;XX ;KW LTR retrotransposon; COPIA superfamily; copia-like polyprotein; ;KW ATCOPIA40_LTR; ATCOPIA40_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4131) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (December 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA40_I is an internal portion of ATCOPIA40, a copia-like ;CC LTR retrotransposon recently integrated in the genome; it is ;CC flanked by a 5-bp target site duplication. Its long terminal ;CC repeats, deposited in Repbase Update as ATCOPIA40_LTR, are 98% ;CC identical to each other. ;XX ;DR Positions 86667 90797 Accession No AC005970 GenBank (rel. 112.0) ;XX ;SQ Sequence 4131 BP; 1417 A; 732 C; 973 G; 1009 T; 0 other; ATCOPIA40_I tttggtatcagagcatccaggttttcgatcaaagcaaaggattgaaaacatgagtgagattattgcagta aacaacaaatcaaaagatggaggaggatcatcgtctattcaatgtccgatgttgaataacacaaactata cggtatggtgtatgaggatggaggctgcactacgagtgcataaagtctggggaacaatcgatcctggatt agaggacgaagagaaaaacgacctagccgagcccttctcttccaatctattccggagtcacttattcttc aagtcggaaaactgaagacttcaaaggcagtatgggataagattcaatctaggaatcttggagcagaacg agtcaaagaagcaaagctaaaaactcttatggcagagtttgacaaactcaagatgaaggacaatgaaact attgatgaatgtgcagggagactttcagaaatttcaacaaaatcaacatctttgggagaagatattgaag aaacaaaagttgttaagaaatttttgaaaagcctaccaacaaagaagtatattcatatagttgcagccct tgagcaagttctagacctcaagaacacaacattcaaagacatagtagggagaataaagacctatgaggac aaagtatgggatgacgatgattaactagaagaccaaggtaaattaatgtatgtagatttgggttctcatt acatgtctcaagaaggaggcagaggaagaggaaaaatccgtggtcggggtagaggcagaggaagagttgg ttataagcagagagatcactctaaggttacttgttatcgctgtgataaattatgcctctaattgtccaga ccgactattgaagttaatcaagctccaagaaaggcaacaagaggctgaagacgatgatgatgatgaagtg gagtctcttatgatgcatgaagtagtgtatctcaacgagggaaacatgaatctagagatttatgaagcat gttctgacaaagcttggtatttagacaatggtgctagtaatcatatgactgggaatcgtgattggttttg caaactcgatgagatggtcactggaaaggttaagttcggagatgattcacgaattgacataagaggcaaa ggatcgatattgtttttgaccaaaaatggagagccaaagacactagcaaatgtctattacatacccgatc tcaaaagcaacatcataagcttgggacaagctactgaggctggctgcgacgtgagactaaaggacaacta cctgacattacatgatcgtgatggtaacctgttggtgaaagcaacaagatcgaggaacagactgtacaga gtggagctaaaagtcaaaaacactaaatgtttacaacttgcagcacttaacgacttaacaaagtggcatg ctcgattaggtcacattaatcttgagaccataaaggcaatggtaacaaaagaatttgtgattggaatacc tagtgccccaaaggagaaggagatctgtgcttcatgtatgcttgggaagcaagcaagacaagtttttccg aaagctactacttatcgtgcttctcagattctagaactcatccatggagacttgtgtggacccatttcac cacctacagctgcaaagagaaggtacatactagttctaattgatgatcactcacgcttcatgtggtcatt tcttttaaaggagaagagtgaagcattcggaaaattcaagacttttaaagcaacagttgagcaagaaacc ggagaaaaaatcaaaacactcagaacagatagaggaggcgagttcctatctcaagaatttcagacatttt gcgaagaagaaggaatcattaggcacctcaccgcgccttacactcctcagcaaaatggagtagttgagag acgaaacagaaccttgttgggaatgactagaagcatcatgaaacacatgagtgttccaaattacttgtgg ggagaagcgataagacatgcaacatatctcattaacagagtgggaacaagagctcttatcaaccaaacgc cctatgaagctctcaagaaaaagaagccaaatgttgaacacttacgcgtgtttggttgtgtgagttatgc caaagttgaattcccacacctaagaaagcttgatgagaggtcgaggattctagtctatctcggaacagaa accggctccaaggcttatacattactagatccaaccacgcggaaaatcatagtaagcagggatgtagtgt ttgatgagaataaaagctggaagtgggctaactctgaattgattgaaattcagaaagaaccaggaatgtt tactcttgctcaaacagagtttcacaataacgaagaagttgagaacgaaacctcagaagaaatagaagaa aatgaagcagaggactcaactaataaagacgcagaagacggtcttgatgaaccaagtgttcctgaaccca atcacagcgatgatgtaccagtctttacacgctcaggaagacaggtcataaaaccggcacacttaaatga ttatgtgttgttggctgaaattgagggtgaacgacttctgcttctgattaatgatgaaccctgggatttt aaggaagcaaataaatacagagaatggcgtgatgcgtgtgatgaagagatcaagtcaataataaaaaaca gaacatggagcttagtctctctacccgtcggtatcaaaccaatagggctgaagtgggtgttcaagataaa gagaaactctgatgggaacataactaaacacaaagcaagactcgttgcaaagggttatgtgcaaaaacat gttgtagactttgatgaagtgttcgctccagtggctcgcattgagacagttcgattcatcatcgctcttg ctgcatctaatgggtgggaagtgcatcatctagacgtcaagactgcattcctacatggcgaattaaagga gaatgtttatgtcacccaaccggagggctttgttacaaagggaagtgaagagaaggtctacaagctgcat aaggctctctatggtttgcgccaagctccacgtgcatggaacattaagctcaatgagattctttagaagt tgttattcgaaaggtgctctaaagaaccttctctgtatcggaaacaagagggtaagcatcttcttatagt tgcagtctatgtggatgatctacttgtcacaggttctagtccaaaactgatagatgacttcaagaaagga atgtcaaagaacttcgaaatgagcgatttgggaaggctcacatattatcttggcattgaggtcacacaag aagaagacgggatcatcttaaaacaagaaagatatgctaaaaagatccttgaagaagctggaattaatga gtgtaaatcaattcttgttcctatgaattctggtctagaactatcaaaagcacttgatgagaagagcatt gatggacaacaatatcggagaagtattggttgcctaaggtacttactacacacaaggccagatctctctt actccgttggtgtcttaagcaggtatatgcaagatcccagagaatctcacggagccgccttgaagcaagt cctgaggtaccttcagggaactacgggttacggtcttgtatttaagaaaggcgataagactggattagtt ggttacagtgacgctagccatagtgtagacgcggacgatggtaagagtaccggagggcatgtgttttacc taaatgagtgtcctattagttggtgctcacagaaacaacaagttgtagctctctcatcttgtgaagccga gtttatggcagctacagaggcagccaagtaagccatttggcttcaagacctgcttgctgaagttattgga acaccatgtgagagagttacattacgagttgacaacaaatccgcgattgcactcacaaagaacccagttt tccatggaagaagcaagcacattcatcgcaagtatcatttcataagagagtgtgtagagaatggtcaagt ctcggtagaacatgttcccggagtcaagcaaagagcgaatatactaaccaaggcactcgcgaagatcaag ttcaaggatatgagagatctcattggagttcaagacttgtcaaatgaagacttcaagcttaaaagagtga a1