;ID ATCOPIA3I DNA ; ATH ; 4393 BP ;XX ;DE Internal region of ATCOPIA3 LTR-retrotransposon. ;XX ;AC AC004557 ;XX ;DT 12-APR-1999 (Rel. 3.3, Created) ;DT 12-APR-1999 (Rel. 3.3, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ATCOPIA3LTR; ;KW ATCOPIA3I. ;XX ;OS thale cress ;XX ;OC Arabidopsis thaliana ;OC Eukaryotae; Viridiplantae; Charophyta/Embryophyta group; ;OC Embryophyta; Tracheophyta; seed plants; Magnoliophyta; ;OC eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4393) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (March 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA3 is a low copy number LTR-retrotransposon that was inserted ;CC in A.thaliana genome several million of years ago since there is ;CC 98% nucleotide identity between its LTRs, ATCOPIA3LTR. ATCOPIA3 ;CC target site duplications are 5 bp-long. ;XX ;DR Positions 20007 24399 Accession No AC004557 GenBank (rel. 109.0) ;XX ;SQ Sequence 4393 BP; 1229 A; 1165 C; 782 G; 1217 T; 0 other; ATCOPIA3I tggtatcagagctttaaacgatccctaaacctaaatctagccgctactctgtttttcatcatttttcatt atttttctttctcttcaatggcttctgagactgtcattacatctgattcaaccagtcttctcaacgtcaa tatgactaatgttaccaaactcacgtcctctaactttctcatgtggaggcgtcaagttcaagctctactc aacggctacgatctcaccggctacattgacggctccattgtcgtcccacctgcaaccatcactgcaaatg gtgcagttacggtcaatcctgccttcaagcactggcaaaggcaagatcaactcatttacagtgctctact aggcgctatttcaatctcggttcaaccgatcctctcccgaacaacaacatctgctgaaatttggactaag ctgatggacacatatgctaaacccagctggtctcacatccaacaattacgacaacagatcaagcaatgga agaaggacaccaaatccatcgatgaattcttccaaggcttggtgatgcgatttgatcaactagctctcct tggcaagccgatggagagtgaggaacagatggaagtcattgtggaagggctctccgatgactacaaacag gtcattgaccaaattcaaggtcgtgaggtacctccctctctcactgaaattcacgagaagttacttaatc atgaagtgaaacttcaagctgcggcatcgtctcttccgatctctgcaaatgctgcaagttatcgtcctcc agccaacaacaagcataacaactccaacaactatcgcggacaaaaccgtaacaacaacaatcgtggtgct aattcataccaacagccaagaaacgatcagccctcttctcgtggttatcaaggaaaatgccaaatctgtg gagtttttggccatagcgctagacgttgttcacagcttcagatgtctggcgcttactccaccccatctcc aagtcaataccctaatgctactgttccatggcagccccgtgcaaatatggcagccatgtcgtacaatcct tggcttcttgatagcggagcaacacaccatcttaccacagatttgaacaaccttgctcttcatcaacctt acaatggtggagaagaagtcacaattgctgatggctctactcttccgatcactcacactggttcatcaac tctctctactcaatctcgttcccttgctttaaacaatattctatatgttcccaacctgcacaaaaatctg atttcagtttacaaattgtgcaatgctaataaggtttctgtggaattctttcctgcccactttcaggtga aggatctcagcacgggggcccggttactccaaggcagaactaaagacgagttatacgagtggccagttcc ttcaaacacacccatctctttattcgcttcacctacaccaaaaacaacacttccttcatggcattcaagg cttggtcacccgtctccgcctgttttaaaatcccttgtttctcagttttctttaccagtttcaaattcct ctcaaaaacattttccttgttctcattgtctcattaataaaagccataagcttccgttttattcaaacac aattatctcctacacacctcttgaatacgtttactctgatgtctggacttctccagttacatctgtcgac aactttaaatattatttaatccttgttgatcattatacccgatatacatggctgtacccattgaaacaaa aatcacaagtacgggagacttttgtggcgttcaaagctctagtggagaatcgttttcaaaccaaaatccg aacattatattctgacaacggtggagaattcattgcgctacgacaattcctgctaacacacggcatttca cacttgacctctcttcctcacacgccggaacacaatggaattgcagaacgaaaacatcgtcacatcctcg aaaccgggttaactcttctcactcaagcctctattccaacttcatattggacatatgcgtttggaactgc ggtttacctcataaatcgcttgcccagttctgtgctcaataatgaatcgccgtattcgaagctcttcaag acttcaccaaattacctcaaattaagagtttttggatgttcgtgcttcccatggctccgcccatatacca atcacaaattggaaagaaggtcacagccgtgtgtatttctcgggtattccttaacccaaagtgcatattt atgccttgatagaagctctggtcgtgtctacacttcaagacatgtccagtttgttgaggatcaatttcct ttttccatctccgatacccattcagtttctaattcaagcccagaagaagcttccccttcatgtcaccaac ccccatctcgcattccgattcagtcatcatctccgccactcgtacaagctccgtcgtcgctgccgcccct aagctcagattctcaccgccggccaaatgctgaaacttcatcgtcttcgtcctcgacgaataatgatgtt gtggtatcgaaagataacacacaagtggataacaggaataatttcataggcccaacaagcagttcttcag cccaaagccaaaataattctaatccaagctcatccatccaaacccaaaatgagcccaatccgagcccgtc accaacacctcaaaattctagcccagaatcttcaccatcgtcttctacctccgccacgtccacagtccca aatccaccaccaccacctccgacaaacaaccacccaatgcgaacccgagctaaaaatcatataaccaagc ccaaaacgaaactctccctcctagcaaaaacagttcaaacccgacctcaaataccaaacacggtgaacca ggctttacgagatgaaaaatggaggaacgctatgggagaagaaatcaatgcccaaatacggaataataca tttgaattggttccaccaaaaccaaatcaaaatgttatttccacaaagtggatttttacactaaaatatc ttcctaatggtactcttgacaggtataaagcaagattggtggctcgaggttttcggcagcaatatggact ccattactctgaaactttcagtcctgtggttaaatctctcacaattcgcctagttctacaattggcagtg tctcgctcatggacaattaaacaactagacgtaaacaacgcttttcttcaaggtacattgacggatgagg tgtacgtcacacaaccacctggttttatcgaccccgatcgaccacaccacgtttgtcgccttaagaaggc gctttatggcctgaaacaggctccacgcgcttggtaccaagagttgagaaattttgtttgctcgttggga ttcaccaattctctcgctgatacatcagtgtttgtttacatcaacgacatccaaatcgtctactgcttgg tctatgttgatgacattattgtcacgggaagtagtgatgcgttggtaatggctttcatcaccgctctttc tcggcgattctcgttgaaggacccgacggatttggtatattttcttggtatagaggcaacaagaacctca caaggtcttcatttgatgcagcataaatatgtttatgacttgttgtctaggatgaagatgttagatgcca aaccggtgtccacaccaatggcgacacatcctaaactttcactctactctggcattgctctagacgaacc cggagaatacaggacagtgatcggcagcttgcaatacttggcgtttacacgaccggatattgcgtatgct gtgaatcgattatcacaatttatgcatcgtcccacagacattcattggcaggctgcaaaacgcgtccttc gatatcttgcgggaactgctactcatggtatattacttcgctcaaactctcctctctcgcttcatgcatt ctccgatgctgattgggctggggacaatgacgattttgtttccaccaatgcatatattgtgtatcttggc tctacacccatagcttggagctcgaagaaacaaaagggagtcgcacgttcttccaccgaggccgagtaca gggctgttgcaaacacaacttcagaaattagatgggtatgctctcttcttactgagttaggcatcacatt accaaagatgcctgtgatatattgtgacaatgttggtgccacatatctctctgcaaatccggttttccat tcaagaatgaagcatctagcattggactatcattttattcgcgacaatgtgagtgccggtgcactacgag tctctcacatatcaacacatgaccaacttgccgatgctctaaccaagccattgcctcgtcaacactttct tcagttttcaagcaagattggagtgagcaaactccctccatcttgagggggca1