;ID ATCOPIA39_I DNA ; ATH ; 3282 BP ;XX ;DE Internal region of the ATCOPIA39 LTR retrotransposon. ;XX ;AC AC007584 ;XX ;DT 16-DEC-1999 (Rel. 4.0, Created) ;DT 16-DEC-1999 (Rel. 4.0, Last updated, Version 2) ;XX ;KW LTR retrotransposon; COPIA superfamily; copia-like polyprotein; ;KW reverse transcriptase; RNaseH; ATCOPIA39_LTR; ATCOPIA39_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 3282) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (December 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA39_I is an internal portion of ATCOPIA39, a recently active ;CC copia-like LTR retrotransposon; it is flanked by 5-bp duplications ;CC of a target site. Its long terminal repeats, deposited in Repbase ;CC Update as ATCOPIA39_LTR, are 99% identical to each other. ;XX ;DR Positions 27097 23816 Accession No AC007584 GenBank (rel. 112.0) ;XX ;SQ Sequence 3282 BP; 1192 A; 536 C; 790 G; 764 T; 0 other; ATCOPIA39_I tggtatcagagctacgctgattactggaaccaaacgaaatggctcaagatctcgggatgaaaacgccggt gaccaagagggacaccaagaaagaaagaaaaggctcacaaaagagcaaactgggaatggctacagagaca gcagaagaagtgaagaaaaatcttgtgtttattgcaagacaagagattaaagaaccaagtggaggaaaca cttggttgatcgacagtggatgcacaaatcacatgacaccaaatgagaagctgttcacaaaaatcaacag agacttcaaagttccaataagagttggaaatggagctgtaatgatgagtgaaggaaaaggagatattgag gttatgacaaggaaagataaaagaggcatacgtgatgttctccttgtacctaaacttgggaaaaatttgt tgagtgttcctcaaatgatcatcaacggatatcaagtcacattaaaaaacaactactgcaccattcatga tagtgcaagaaagaaaattggagaagtagagatggtgaacaagagttttcacctaaggtggctttcaaac gaagaaacagcaatggtggctaaagatgaagcaacagagttatggcacaagcgacttgggcatacaggac actcaaaccttaagatcctgcagtcaaaagaaatggtaactggcttgcctaagtttaacgtggaagaagg aaagtgtgaaagctgcatcttaagcaaacacagtcgtgatccatttccaaaagaatcagaaacaagagca aaacacaagcttgagctcattcacagtgatgtgtgtggacctatgcaaaactcatctatcaatggtagca ggtacatacttactttcattgatgatgctacaagaatggtttgggtctacttcctgaaagcaaaatcgga ggtatttcagactttcaagaaatttaagaatcttgttgagaataatgcaaattgcagaatcaagaagctt agaatagatagaggaacagagtatctttcgaaagaattttcagagtttctagaagggaatggcattgaga ggcaacttactgcagcatactctccacaacaaaatgaagtctcagaaagaagaaacaggagtttagtgga gatggcaagagccatgattaaagcaaaagatctgccattaaaattatgggctgaagctgttcatgttgca gcctatgctcaaaatagaacaccaacaagaaccctgaagaacaagacacctctagaagcttggagtgact caaaaccgtctgtaagtcacatgaaagtgttcgggagcatatgctatgtccacatacctgatgaaaagag gaggaaatgggatgacaagtcaaaaagagctatatttgtcggatacagctctcaaacaaaaggttacaga gtgtacctgttgaaagaaaacaagatagacatttccagagatgtcatctttgatgaagacagtaaatggg actgggaaaagaaggaagtaatcaaacattatgatatgtcacgtgaaccagaagacagaggagaccaaca agcagatgagcagaactcaagagataatgaagctagagggagaagaaacgttttaccaagtcccttgaat ctgaattttgacagtcctggaggcagcacaagtcagccaaacaagaaaaccagatcgattaatgacattc tcctcactgctccatttgcagatgtttaatactaaggagcatgtgaaagctgctatactggtgcagaaga gcctgcagtatttgaagaggctgcaaaacatgaggaatggacacaagcaatggaagaataaatattaatg atcgagaagaacaaaacgtgggagctggtgaaaagaccaacaaacaaaaatgtggtaggcgttaagtgga tattcaggctgaaaactgatgcagaagggaatgtggtgaaacacaaggcaagacttgtagcaaaagggtt tactcagcaacatggggttgactatctagagacatttgctcctgtctctagacatgaaacaatcaggttg attcttgttgttgcagctcagaggaaatggaaattgttccaattagacgtcaagtctgcatttctaaatg gtactcttgaagaggagatatacgcagaacaacctcttggatttgaggaagaaggaaaagaagatcatgt tctgcgtctacacaaagctttgtacggtctgaaacaggcaccgagagcctggtatagtcgaattgatgaa ttcttccagcgagagaacttcacaagaagtgacaatgatcatgctctatatactaaagaagttctgggaa agctattggtggtgtgcatatatgtggatgatctcattgtaacaggtgatgatgaggaaatggtggaaga atttaagactgcgatgaagaatgagtttgaaatgtctgatttgggattacttaactactttctgggaatg gaaattgtgcaaagtcttgaaggaatttttctatctcaagagtgctatgcgagaaaactgttgaaaaagt tcaacatggaagacagcaagatcatgagtacaccactgttgcctcaaagaaaagatcaagaagaagatga gagtctggccgactcaaaagtttacagaagtctggtagggggtttgttatacctaacaagcactcgtcct aacttaatgttttttgcatcatacttgtctaggtacctaaaggaaccaaaaatcaaacactttaaggaag ctaagagggttcttaggtacattaatggaacaattgatatgggaatgaggttcacttcaactatggagcc aaagctgattggtcactcagacagtgattagggaggttgcagagaagatctgaaatcaactacaggatat tgttttagtattggatcagctgtgttcacatggcaaaccagcaagcaagagaccattgctcagtccactg cagaggcggaatatatggcgttgtgtgcagcaacaaatcaatcaatgtggttaaagcgattgttagaaga cttgaagttcaccactcaagagggagtacctatttactgcgatagccagtcagctatgccattggtaaga atcctgtccagcatagaaggacaaaacacattcagatcaagtatcatgtcgtaagggaagcagaaagaaa tggggatatcaaactgttatactgcagaagtgaagaacagttggctgacatactaactaaagcattggga agacagagctttgaaggatttcgagaaaagcttggtttgagttgcaaaatggcaagagggag1