;ID ATCOPIA38B_I DNA ; ATH ; 4479 BP ;XX ;DE Internal region of the ATCOPIA38 LTR retrotransposon. ;XX ;AC AC007134 ;XX ;DT 16-DEC-1999 (Rel. 4.0, Created) ;DT 16-DEC-1999 (Rel. 4.0, Last updated, Version 2) ;XX ;KW LTR retrotransposon; COPIA superfamily; copia-like polyprotein; ;KW reverse transcriptase; RNaseH; ATCOPIA38B_LTR; ATCOPIA38B_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4479) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (December 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA38B_I is an internal portion of ATCOPIA38B, a recently active ;CC copia-like LTR retrotransposon; it is flanked by 5-bp duplications ;CC of a target site. Its long terminal repeats, deposited in Repbase ;CC Update as ATCOPIA38B_LTR, are 99% identical to each other. ;CC There are 80% nucleotide identity between ATCOPIA38_I and ;CC ATCOPIA38B_I, and 68% nucleotide identity between ATCOPIA38_LTR ;CC and ATCOPIA38B_LTR. ;XX ;DR Positions 1913 6391 Accession No AC007134 GenBank (rel. 112.0) ;XX ;SQ Sequence 4479 BP; 1204 A; 855 C; 973 G; 1447 T; 0 other; ATCOPIA38B_I tggtatcagagccaacaacgctctcatctccatcgtttttttttccgacttgatttcttcgttctgagct ccgattcgtcttcctcgttgcatttccttaagatccaatggtgacggtagctcgtgtgactcggaaatcg actcgctcgaaagctggtacaagttcagtgactcggaagtcgcgatccaccggtgctgttactactcctc cgaattctcctccggttaacagatctggagcttcgcgagccttaacatcatcggaatctggagatccgac tcaatctccctttttcctgcatagtgcagatcatccaggtttgaacataatctctcatcgccttgatgaa acgaattatggtgactggagtgttgctatgcttatttctttggatgctaagaacaaaactggattcatag atggaactttatctcgtcctttagaatcagatttgaattttcgtctatggtctagatgtaatagcatggt gaagtcttggctattgaactctgtttctcctcagatttatcgaagcattctccgtatgaatgatgcttct gatatatggcgtgatcttaatagtcgattcaatgtgactaatcttccacgcacgtataatcttactcaag agattcaggactttcgtcagggaactttgtctttgtctgagtactacactcgtctcaagacattgtggga tcaattggatagtacagaggctttggatgagccttgtacttgtggtaaagcgatgcgtctgcaacagaag gcggagcaagctaagatagtgaagtttttggctggtttgaatgagtcttatgctattgttcgcaggcaga tcatagctaagaaggctttacctagcttgggagaggtgtatcacattctggatcaagacaatagtcaaca gagtttctccaatgtggttgctccacctgctgctttccaagtttctgaaataacacaatctcctagtatg gatcccacagtttgctatgttcagaatggtcctaataaaggtaggccaatttgttctttctacaatagag ttggtcacattgctgagagatgttacaagaaacacggttttcctcctggtttcactccaaaaggtaaggc tggtgagaaacttcagaaaccaaaacctttggctgcaaatgttgctgaatctagtgaagttaatactagt ttggagagtatggttggaaatttgagtaaggaacagcttcagcaattcattgctatgttcagttctcagc ttcagaatactcctccgagtacttatgcaactgcaagcacttctcagtcagataatcttggtatttgttt ttcaccatctacctatagtttcattggaattttgactgtagctcgtcatactctttcttctgcaacatgg gtgatagactctggagctacacaccatgtgtctcatgatagaagtttattctcaagcttggatacttctg ttttgagtgcagtgaatctgccaacaggacccactgtgaagatcagtggtgttggtactttgaaactgaa tgatgacattctacttaagaatgtgttattcatcccggagtttcgactgaatcttataagtataagttct ttgactgatgatattggctcccgtgtgatatttgataaaaattcttgtgaaattcaggatcttatcaagg gccggatgcttggtcaaggtagacgagtggcgaacctctacttgttggatgttggagatcagtctatctc agtgaatgcagttgtggacatcagcatgtggcataggaggcttggtcatgcttctttgcaaagacttgat gctatttctgattcattgggaactactaggcataagaataagggttctgacttttgtcatgtatgtcatt tggcaaaacagcgaaagttatcttttcctacttcgaataaagtttgtaaagagatatttgatctactaca cattgatgtttggggtcctttctcagttgaaacagttgaaggatataagtatttcttgactattgttgat gatcattcaagagcaacatggatgtatttgcttaagactaaatcagaggttcttacagtatttccagcgt tcattcaacaagtggagaatcaatataaagtgaaggttaaggctgtacgttctgataatgcacctgagtt aaaatttacaagcttctatgcagaaaaagggattgtttcttttcactcatgtcccgagactccagagcag aattcagttgtggaaagaaaacatcaacacattttgaacgttgctcgagctctcatgtttcagtctcagg tacctctttctctgtggggtgattgtgttcttactgctgtgtttttgataaacaggactccatcacagct attgatgaacaagactccatatgagattctcactggtacagcacctgtttatgagcagcttcgtactttt ggttgcttgtgttatagttctacatctccaaaacaaagacataagtttcagccaaggtcacgagcttgtt tgttcttgggttatccttctggttacaaaggttacaagctgatggacttggagagtaacacagtgttcat ctcaaggaatgttcagtttcacgaagaagtgtttcctctggcaaagaatccgggttcagagagttcgttg aagttgtttacaccaatggttcctgtgtcctcaggtatcatatctgatactactcattctccctcttctc ttccatcacaaatttctgatctaccaccacaaatttcttctcagagagttaggaaacctcctgctcatct gaatgattatcattgcaacaccatgcaatctgatcacaaatatcctatttcttctactatctcttactct aaaatttctccatctcatatgtgttatatcaataatatcacaaaaattcctattcccactaattatgctg aggcacaggacaccaaggaatggtgtgaggcagttgatgcagagattggtgcaatggagaagacaaatac atgggagattactacgttacctaaagggaagaaagcagttggttgtaaatgggtgtttactttgaagttt ttggcagatggtaatcttgagaggtataaggcacgtttggttgcgaagggttacacacagaaagaaggct tggattacacagatactttttctccggttgctaaaatgaccactattaagctgttgttgaaagtttcagc ctctaagaagtggtttcttaagcaacttgatgtttctaatgctttcttgaatggtgagttggaagaagag atattcatgaagatacctgaaggatatgcagagagaaaaggaattgtgttaccatctaatgttgttctaa ggttgaagagatcaatttatgggttgaaacaggcttcaaggcagtggttcaagaaattttcaagctcttt actcagtttgggttttaaaaagactcatggtgatcatactttgtttctgaagatgtatgatggtgagttt gtgattgttctggtttatgtggacgatattgtgatagctagcactagtgaagctgctgcagcacaattga ctgaagagctggatcaacgtttcaaactgagagatttgggtgatttaaagtattttttgggtcttgaagt ggctaggacgactgcagggatttcaatttgtcaacgcaagtatgctttggagctattacagtctacaggt atgcttgcttgtaaacctgtttcggtccctatgattccaaatttgaagatgagaaaagatgatggtgatt tgatagaggatatagagcagtatcgacggattgttggtaagctaatgtatttgaccataacaagacctga cattacatttgctgtcaacaagttgtgtcaattctcatcagcacctcggactactcatctcactgctgct tatagagttctgcagtacatcaaaggcacggttggacagggtcttttctattcagcatcttctgatctta ctctcaagggatttgctgattctgattgggcttcttgtcaagacagtcgacgctctactacaagtttcac aatgtttgttggtgattccttaatatcttggcggtctaaaaagcagcacactgtttcaagatcttctgca gaggcagaatatagagctttagctctagccacctgtgaaatggtctggttgtttactctgcttgtctctt tgcaggcttcaccaccagttcctattctgtactctgatagtactgcagcgatctatattgctacaaaccc ggtcttccatgagcggaccaagcatataaaattggactgtcacacagttagagaacgcttagacaatggc gaactcaagttgctgcatgtacgaacagaggatcaggtggccgatatactgactaaaccattgttcccct atcaattcgaacatctcaagtccaagatgagcattctcaacatcttctcatgctcatcttgagggggcc1