;ID ATCOPIA38A_I DNA ; ATH ; 4206 BP ;XX ;DE Internal region of ATCOPIA38A copia-like LTR-retrotransposon. ;XX ;AC AC007519 ;XX ;DT 25-OCT-2001 (Rel. 6.2, Created) ;DT 25-OCT-2001 (Rel. 6.2, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW copia-like polyprotein; reverse transcriptase; ;KW ATCOPIA38A_I; ATCOPIA38ALTR. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4206) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (October 24, 2001) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA38A_I is an internal region of the ATCOPIA38A copia-like ;CC endogenous retrovirus flanked by 2% divergent ATCOPIA38ALTR ;CC long terminal repeats and a 5-bp target-site duplication ;CC (ATTCA). CDS is slightly damaged. ;CC ATCOPIA38A_I is ~20% divergent from ATCOPIA38_I and ATCOPIA38B_I. ;XX ;DR Positions 45491 41286 Accession No AC007519 GenBank (rel. 124.0) ;XX ;SQ Sequence 4206 BP; 1147 A; 796 C; 899 G; 1364 T; 0 other; ATCOPIA38A_I tggtatcaaagccttccaagctcaaaactccattgttttcgatctgatttcttcattctcagctcaagtt cgtcttcttcgttgttctcgctccagatacaatggtgacagctagagttactcggaaatccactcgatcg aagtccggtacaagttctgcagctcgaaaatcatcgcgatccaccggtgttgatgaatctcctccgatct ctcctccagttcacaaatccaacgtttctggagcttcgcgagtcatcgcaccaccggaatccgttgatcc gactcagtctcccttcttcttgcatagtgcagatcatccaggtttgaatatcatatctcatcgtcttgat gaaacaaactatggtgattggaatgttgctatgcttatctccttagatgctaagaataaatctggattta ttgatggaactctccctcgtccgttggaatcggataagaattttcgtctttggtctagatgcaaaagcat ggtgaagtcttggttattgaattctgtatctcctcagatctataggagcattctccgtatgaatgatgct tctgatatatggcgtgatcttcacagtcgtttcaatgtgactaatctcccacgcacatataatcttactc aagagatccaggattttcgccaaggtacattgtctttgtctgagtactatactcgcctcaagacattgtg ggatcaattagaaagtacagaggaactagatgatccctgtatttgtggtaaggctatgcgtttgcaacag aaggcagagcaagctaagatagtgaaattgttagctggtttgaatgattcttatgctatcattcgcagac agatcattgctaagaaagcactcccaagtttagcagaggtgtatcacattctggatcaagacaacagtca acaaggtttttccaatgtggttgctccaccggctgcttttcaggtctctgaggcaatgatggctactaac aatgatgtgaatatgctatgttcagagtggtccaaacaagggcagaccgatttgttctttctgtaatagg gttggacatattgcagaaagatgctataaaaagcatggattccctcttggttttactcctaaaggcaaag gtggtgacaagtctcaggtgatagattcaggagcaatacatcatgtatctcatgataagagtcttttctt gaatttggatacttctgttgtgagtgcagtgaatttaccagctggtcctactgtaagaatcagtggtgtt ggtacattgcgacttaatgatgacattcttctcaagaatatcttattcattcctgagtttcgcctgaatc taatcagtataagttctctgactgatgacattggttcacgagtaatatttgataagacttcttgtgaaat tcaggatcctatcaaggctcggatgcttggtcaaggtaggagaattgcgaatctatatgtgctggatatt gaagatcctattgtctcagtgaatgcagtggttgatatcagtatgtggcatcgaagacttggtcatgctt ctctacagagattggatgttatttcagactctttggggactactaagcctaagaataaaggctcagatta ttgtcatgtttgtcatttagctaaacagagaaagttacccttcccttctcagaataaagtttgtaatgaa atctttgatttgttacacattgacatttggggtcctttttcagttgagacagtggatggctataaatatt ttttgacaattgtggatgatcattccagagctacatggatttatttgcttagaaacaagtcagaagttct tactgtgtttcctgctttcattgaacaagttgagaatcagtataaagtgagagtaaaggcagtgagatca gataatgcaccagaattgaaattcacaagtttatatcagcagaaagggattgtttcgtttcattcctgtc ctgaaacaccggagcagaatttagtggttgagcgtaaacatcaacacatactcaatgtttctcgggctct catgttccaatctcaggtaccactctctctttggggtgattgtgtgttaacggctgtgtttcttatcaac aggacaccttcccagctcttatcaaacaagactccatatgagattctcactggtacagttcctgtttatg agcagtttcgaacctttggttgtttgtgttacagttctacttcgccaaaaaaagacataagtttcagccg agatctaaagcgtgtgtgtttttgggatatcctgctggttacaaggggtacaagttaatggatttggaga gtcacactgtgtttatctcaaggaatgttgtttttcatgaggaggtatttccattggctgtggatccaaa gtcagagagttctttgaagttgtttactccaatggttcctgtgtcctcaggtattacacaatctcctatc tcttctcttccatcacaaatttctgatctaccaccacaaatttcttcacagagagttaggaaacctcctg ctcatctgtcagattatcattgcaacatcacgcaatctaatcacaaatatcctatttcctctactatctc ttactctaaaatttctccatctcacatgtgttatatcaataatatcacaaaaattcctattcccaccaca tttgctgaggcacaggacaccaaagaatgatgtgaggctgttgatgcagagattggtgctatggaaacta cacacacttgggagattactactttacctgcagggaagaaggcagtagggtgtaaatgggtattcagttt gaagtttttggcagatggcagtcttgagcggtataaggctagattggttgctaagggttacactcagaaa gaaggtctagactatacagatactttctctccagtggcaaagatgactacaatcaagttgttattgaaga tttctgcctctaagaaatggttcttaaaacagcttgatgtgtctaatgctttcttgaatggtgagttaga ggaagagatttacatgaagttacctgaaggttatgcggcaaggaaaggtatcactctacctcctaattca gtctgtcgattgaagagatccatttatggtttgaaacaggcctctcgtcagtggtttaagaagttttctg cttcattacttgatttgggttttaagaagacacatggtgatcatactttgtttattaaagagtatgatgg agaatttgtgattgttttggtttatgttgatgatattgctattgcgagtacaagtgaaggtgctgcaata caattgactcaggatttacaacagcgattcaagttaagagatcttggggatttgaaatattttttgggtc ttgagattgctagaactgaagctggtatttctatctgccagagaaagtatgctcttgagttattagcatc tactggtatggttaactgtaaacctgtttcagttcccatgatcccgaatgtgaagatgatgaagactgat ggtgatttgttggatgatagagaacaataccgtcgtattgtaggaaagctgatgtatttgacaattacta gacttgacatcacctttgcagttaacaagttatgtcagttttcctctgctcctaggacgtctcatcttca agctgcttatcgagttttacaatatatcaaaggcagtgttggccaaggtctgttctattctgcatctgca gatcttactcttaaaggttttgcagattcagattgggcttcctgtccagatagtaggagatcaacaactg gattcagcatgtttgtgggtgattcattgatatcttggcgttccaagaaacagcatgtggtttccagatc ttctgcagaggctgagtaccgtgccttagcactggttacgtgtgaactggtatggcttcacactttgctc atgtctttaaaagctagctacttggttcctgtgttatattctgatagcacaactgctatttacatcgcca caaatcctgtgttccatgaaagaacgaagcatatagagctagattgtcacacggttagggagaaactaga caatggcgagctgaagttgcttcatgtgcgaactgaagaccaagtagcggacattcttactaatccgtta tttccccatcaattcgaacaccttaaatccaagatgagcattcttaatatcttttcatgcacatcttgag ggggca1