;ID ATCOPIA36_I DNA ; ATH ; 4180 BP ;XX ;DE Internal region of the ATCOPIA36 LTR retrotransposon. ;XX ;AC AC006248 ;XX ;DT 16-DEC-1999 (Rel. 4.0, Created) ;DT 16-DEC-1999 (Rel. 4.0, Last updated, Version 2) ;XX ;KW LTR retrotransposon; COPIA superfamily; copia-like polyprotein; ;KW reverse transcriptase; RNaseH; ATCOPIA36_LTR; ATCOPIA36_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4180) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (December 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA36_I is an internal portion of ATCOPIA36, a recently active ;CC copia-like LTR retrotransposon; it is flanked by 5-bp duplications ;CC of a target site. Its long terminal repeats, deposited in Repbase ;CC Update as ATCOPIA36_LTR, are 99% identical to each other. ;XX ;DR Positions 67877 72056 Accession No AC006248 GenBank (rel. 112.0) ;XX ;SQ Sequence 4180 BP; 1498 A; 735 C; 1009 G; 938 T; 0 other; ATCOPIA36_I tggtatcagagcttatcgattgagaggacaagagaaaacactaaaaagagagagaggcaacaaaagtgag atcgtatacgtctcagcaaaaagcgagacgatgcaaggctcctcacatcaagtcatccctatattcgatg gggagaaatatgacttctggagcattaaaatggcaaccattttcaggaccagaaaactatggtccgtggt tgaagaaggcgtaccggtcgaaccggtacaagcggaagaaactcctgaaactgcaagagcaaagacgctc agagaagaagcagtgacaaatgatacaatggctttgcaaatcttgcaaactgccgtaaccgatcaaatct tctcacggattgcagcggcatcatcatcaaaagaagcgtgggatgtgttgaaggacgaataccaaggatc tccacaagtccgattggttaaacttcaatcgctgcgtagagagtacgagaacttgaagatgtatgacaat gacaacatcaagacattcaccgataagttaattgttctggaaattcaattgacttatcatggtgaaaaga agacaaacactcaactcatacagaagatactcatctctctcccagccaagttcgacagcattgttagtgt tctagagcaaactcgcgacttggatgcactaacaatgtcagaacttcttggtatcttaaaagcacaagaa gcgagagtaactgcaagagaagaaagcacaaaagagggagcattctatgttcggtccaaaggaagagaat ccggtttcaaacaagacaacaccaacaaccgtgtcaatcaagacaagaaatggtgtggttttcacaagag tagcaaacacacagaagaagagtgtcgagagaaaccgaagaatgacgatcatggcaaaaataagagaagt aacatcaagtgttacaagtgtgggaagatcggccattacgcaaatgagtgtcgctcgaagaacaaagaga gagctcatgtaactcttgaagaagaagacgtaaatgaagatcatatgttgtttagtgcaagtgaagaaga atcaacaacgttaagagaagatgtttggttggtagacagtggctgcacaaaccatatgacgaaagaagag agatacttttcaaacatcaacaaaagtatcaaagtcccgattagagtcagaaatggagatatagtcatga cagccggtaaaggagatattaccgtcatgacaaggcatggcaaaagaatcatcaagaatgttttcttagt gcctggtttggagaagaacctattgagcgttcctcaaatcatctcaagcggctattgggtacgttttcaa gacaagagatgcatcatccaagatgcaaatggaaaggagatcatgaacattgagatgacggataagagct tcaagatcaagttaagttcagtcgaagaagaagccatgacagccaatgttcaaacagaggaaacatggca caaaagacttggccatgtaagcaacaagcgcttgcaacaaatgcaagacaaggaattggtaaatgggtta ccaagattcaaagtgacgaaggagacatgtaaagcgtgtaatcttgggaagcaatcacgcaagagctttc caaaagaatctcaaacgaagacaagagaaaagcttgagattgtgcatacggatgtgtgcggaccgatgca acaccaatcgatcgatggaagtcgctactatgtgctgtttttggatgattatactcacatgtgttgggta tacttcctaaaacaaaagtcggagacgttcgcaacgttcaagaaattcaaagcgttggtggagaaacaat caaactgttccatcaagacgttgagaccgatggaggtggtgagttcacttcacgagaattcaatcagttc tgtgaagatgaaggaatcaataggcaagtgactttgccttactcacctcaacaaaatggtgcagcagaac gcaagaatagatcattggtggagatggcaagatcaatgcttgttgaacaagacttacccctcaagttatg ggcagaagcggtatatacctcggcgtatttgcaaaatcgcttaccatcaaaagcaatagaagatgatgtg acgcctatggagaagtggtgtggacacaaaccaaacgtgtcacacttgaggatatttggaagcatatgtt acgtgcatataccggatcagaaaagaagaaagctagacgctaaagcaaagtgtggtattctcatcggtta tagcaatcaaaccaaaggctatagagttttcttactggaagatgagaaggtggaagtatcaagagatgtt gttttccaagaagacaagaagtgggattgggataaacaagaagaagttaagaaaacttttgtcatgtcca tcaacgacatacaagagtcaagagatcaacaagagacatccagccatgatttgtctcaaatcgatgatca tgctaacaatggagaaggagaaacctcaagtcatgtgttatcccaagtcaatgatcaagaagaacgagaa acttcagaatcaccaaagaaatacaagtccatgaaagagatcttggaaaaggcaccaagaatggagaatg atgaggcggctcaaggcatagaagcttgtcttgttgcaaatgaagaaccacagacttatgatgaagctcg tggtgataaagaatgggaagaagccatgaatgaggagataaaggtgatcgagaaaaacagaacatggaaa ctagtagacaaaccggagaagaagaatgtgataagcgtgaagtggatctataagatcaagacggatgcaa gtggaaatcacgtcaagcacaaggcaagactagttgcgagaggtttttctcaagaatatggaatcgatta tcttgagacattcgcccctgtttcaagatatgatacaatacgagctttacttgcgtatgcggctcaaatg aagtggagattgtatcaaatggatgtgaagtcggcgtttctaaacggagagcttgaagaagaagtttatg tcacacaaccacctgggtttgtgatagaaggcaaagaagagaaggtgttaaggctttacaaagccttata tggtcttaagcaagctccacgtgcatggtatgaaagaattgattcttacttcattcaaaatggttttgca agaagtatgaatgatgcagccttgtacagcaagaagaaaggagaagacgtgttgatcgttagcttgtacg tcgatgatcttatcatcactggaaacaacactcatctcatcaacacattcaagaaaaacatgaaggacga gttcgagatgacagatctcggtttgctaaactacttccttggaatggaagtaaaccaagatgacagtggc atttttctttcacaagaaaaatatgcaaacaaacttattgataagtttgggatgaaagagagcaagagtg taagcaccccacttacaccacaagggaaaagaaaaggagtagaaggtgacgacaaagaatttgcagatcc aacaaagtaccggagaattgtcggaggattgctctatctatgtgcatcaagacctgatgtgatgtacgca agttcttacctatcaaggtacatgtcatcaccaagcattcaacactatcaagaagccaaacgagtgttga gatacgtcaagggaacgtcaaattttggagtactctttacaagcaaagagacaccaagattagttggcta ctcggacagcgattggggtggttctctggaagacaagaaaagcaccacaggttatgtctttactcttggt ttggctatgttttgttggcagtcttgtaagcagcaaacagtggctcaatcaacggcggaagcagagtaca tagcagtgtgtgctgcgacaaaccaagccatatggttgcaaagactttttgaagacttcggcttaaagtt caaagaaggtattcccatcttatgtgacaacaagtcggcaattgcgattggaaggaatcctgtgcaacat agaagaacgaagcacatcgagatcaagtatcatttcgtgagagaagccgagcacaaaggactcattcaac ttgagtattgcaaaggagaagatcaactcgcggatgtacttaccaaggcgttaagtgtttcaaggtttga aggtcttagaaggaagcttggagtgaagccgagatatgattaagggggag1