;ID ATCOPIA35_I DNA ; ATH ; 4148 BP ;XX ;DE Internal region of the ATCOPIA35 LTR retrotransposon. ;XX ;AC AC007188 and AC006250 ;XX ;DT 16-DEC-1999 (Rel. 4.0, Created) ;DT 16-DEC-1999 (Rel. 4.0, Last updated, Version 2) ;XX ;KW LTR retrotransposon; COPIA superfamily; copia-like polyprotein; ;KW reverse transcriptase; RNaseH; ATCOPIA35_LTR; ATCOPIA35_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4148) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (December 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA35_I is an internal portion of ATCOPIA35, a recently active ;CC copia-like LTR retrotransposon; it is flanked by 5-bp duplications ;CC of a target site. Its long terminal repeats, deposited in Repbase ;CC Update as ATCOPIA35_LTR, are 97% identical to each other. ;CC One half of ATCOPIA35_I is present in the ACOO7188 GenBank ;CC sequence, and the second half is present in the AC006250 sequence. ;XX ;DR Positions 2320 1 Accession No AC007188 GenBank (rel. 112.0) ;DR Positions 109317 107490 Accession No AC006250 GenBank (rel. 112.0) ;XX ;SQ Sequence 4148 BP; 1405 A; 670 C; 1009 G; 1064 T; 0 other; ATCOPIA35_I gttcttaatctttcttgaaaactagatttggtatcacagcaagatcgatcttgcagaatgagtgaaataa ttcccgcagcttcacccgcagctaaagcaatgagagaagtgagtagatcttcttcgattcaatgtcctat gctaaacgcaacgaattacacatgatgggccatgaggatgaggagagcgcttaaggttcacaagacttgg gatgtgatagagaaggttacggagccgtttgatgaagacaagagtgatgttgcatgcaccttgttgtttc aatccattcctgaatcataagcattacggattggagaacttgagacagcaaaagaagtatgggattcgat caaagcaagagatgtgggggtagagagagtgaacgatgctagattgcagaccctaatggctgaatttcat cgactgaagatgaaggattctcataaaatagatgactttgcaggcatgttgtctgagatctcagtaaaat cggctgctttgggtgtaattattgaagaatcaagacttgttaaaaagtttcttaagagtgttcctcggaa gagatacattcacattgtggctgctttagaacaagtcttggatcttaatgccataacttttgatgacata gttggtcgtttaaaggtgtatgaggaacgagtttacgacgaagacgatcctgaagaagaccaaagcaagc ttttgtattcaagtatggactcaagtaaacgtgaatcagagggtgaggaggaagaggatcctatagggga agaggacgaggacggaatggtggcagagatgcatcacatataacatgttttagatgtgataagatcggcc actatgcttcgtattgtcctgatcgattgttgcaattgcaggaaactcaagaaaatgacaataaggagac ccaagtcgcggatgagcttatgatgcatgaagtggtttatctaaatgaacaaagttgtatgccaagcagt tttgaaacaaacgttgatggagagaatgtttggtacctggacaacggagctagtaaccacatgacaggag atcgtcgatactttgacaagatggaccattctattaccgggaaaatacgctttggagatgattcacgcat cgacattaagggaaagggcacaatagctttcatagacttgaatggtaaaccaagagtaatgttagatgtc tattttattcctgaactcaagagcaacataattagccttggacaagctactgagtcaggatgtgaaataa aattgaaggatggatatctaactatgcatgatcaagaaggaaagctgttggtaaaagctgagaggtctag gaatagtctatacaaagtaaagatgggcttaagaaaggaagcatgtttatacctaacaagtacaagtatg tcaagtctgtggcacgcaagaatgggacacgtgagtctcatcacactaaagtctatgattgataaggaat tgatccaaggagctccaagtttagtgattgagtcggaggtttgtggttcttgcttacttggaaagcagac aaggcagtcattcccacaagcgaccgtctttagagcaaccaagaagcttgagctgatacacggagatctg tgtggtccaataacaccaaaaacaagtgttggaaatcgttatatctttgtactcattgatgattattctc gttacatgtggacagtgctgttaaaggagaagggagatgctttttttaagtttaaaaacttcaaagcttt ggtagagaaagaatctggagagaagattcaaactttcataactgacagaggaggagagttcgtgtctgga gagttcaattctttctgcgaaaggacagggataagaaggcatctcactgctccatatacaccacaacaaa acggtgaagtagagagacgtgacaggactctattggagatggcgagaagcatactgaagcatatgcacat gcctaattatttgtggggggaagccataagacactctacctatctaatcaacagagtcgctacaagagct cttaaggatagaaccccatatgaatgcttcagagagaagaaaccaatcgttgaccacatatgaatctttg gttgtacggcatatgcaaagatagacaagcagtttttgaagaaattagatgataggtctcgagtactcat tcatttagggacagaatcaggatcaaaagcttacagattactcgatccacaaacaaagaaagtagtggtc agtcgtgatgttgtctttgacgagacaaagggctggaactggacacaggatgactcaacacaagacggag aaggaagcttcaaagtcatgattgaagactttggtgatcatgaacttaaagagaaagaaggagatgcaga cacagatcagatttctccagaacaaaatgatgattctaattctgagacaagtcaagaagcaatagaagaa gcaacagagtcaagtgaaagtgtttctcctctgcaagcattaagaagatcaactagacaggttagtagac caaaataccttgaggattacgtattgcttgcagaagaggagggtgagatgttacttttgactctaaacaa cgagcctagatgtttttatgaagcaagagaacataaggagtggatacgcgcctgtgaagaagaaatcaac tctattgagagactagagacatggaatctcgtgaacttaccagtttgagtgaagccgattggtctgaagt gggtattcaaacttaaaagaaactctgatggaagcataaacaaatacaagggtcgccttgttgctaaagg gtatgtccagaagtatggagttgatttcgaagaagcctttgcacctgtagcacgaattgaaacaataaga ttgctcatcgacttagcagcagctcatagttgggagattcatcacctcgacgtcaaaactgccttcttac acgaagaactaaaggaaatagtttatgtcttacaactagagggctttgagaagtttggaaaagaggataa ggtttataaacttaaaaaggctttgtatggattgagacaggccctaagagcttggaacaacaagctaaat cacattcttgttgaacttctttttaagaagtgctctaaggagccatcagtctaccgcaaagaagttaaag gtaatctcctcattgttgttgtgtacgtcgatgacttatttgtcacatggacaagcttagaattgatcaa caaattcaagagggagatgtctgctaagtttgagatgagtgatctcgggaagttgacttattatctgggg atagaagtaactcaacacaatgaaggaataatattgtcataaagtcgatatgctctcaagattttagaag aagctgggatgaaagactgcaacctagcacacactcctatggaaattggtttgacttggaaaaatcagaa aatgaaaaggaagtgaatacaacagattttagaagaaacgttggttgtctcagatatctgctacatacaa gacctgacttgtcgttttgtgtaggagttttgagtatatatatgcagagtcgcagagaatcacatgcggc tgcgatgaaacaatgtttaaggtacttaaagggaactactacacttggtatatcgttcactcgaagcatg gagataccaagactagtaggatacagtgatagcagccataatgtggatccagatgatgggagaagcacag taggacatatattttatcttggcaaaggaccaatttcttggtgttctcagaaacaagacactgtggcgat gtcgtcttgtgaagcagagttcatggcaggaacagaggcaacaaaacaagcaatttggcttcaagatctt ttgagtgagattacaggtacatcaagtgagagtgtaaccatacgcatcgacaacaaatcagctattgccc ttacgaagaatccggtctttcatggtcgaagcaagcacatacataggagataccatttcattagataatg tgttgagaatggtcaaattgaagtggaacgtgtttcagagatgaacaaaaggcagacattttaacaaagg cacttggtcgatccaagttcaaagagatgagaagcttcattggagttcaagacttaaagggagaagagtt caagcttaagagggagaa1