;ID ATCOPIA34_I DNA ; ATH ; 4260 BP ;XX ;DE Internal region of the ATCOPIA34 LTR retrotransposon. ;XX ;AC AC007178 ;XX ;DT 16-DEC-1999 (Rel. 4.0, Created) ;DT 16-DEC-1999 (Rel. 4.0, Last updated, Version 2) ;XX ;KW LTR retrotransposon; COPIA superfamily; copia-like polyprotein; ;KW reverse transcriptase; RNaseH; ATCOPIA34_LTR; ATCOPIA34_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4260) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (December 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA34_I is an internal portion of ATCOPIA34, a recently active ;CC copia-like LTR retrotransposon; it is flanked by 5-bp duplications ;CC of a target site. Its long terminal repeats, deposited in Repbase ;CC Update as ATCOPIA34_LTR, are 92% identical to each other. ;XX ;DR Positions 7442 3183 Accession No AC007178 GenBank (rel. 112.0) ;XX ;SQ Sequence 4260 BP; 1269 A; 707 C; 1069 G; 1215 T; 0 other; ATCOPIA34_I aaactggtatcagagccaggttactttgttcttctttcgtcctgcgaattttttgcataagaagttttgt gcagaataaggttctggaaattccatgttttgtaatctggtgagaagatgtcttcgatgaatgtgaagat tgataagttttctggaagaaacagtttcagtctctggcaaattaagatgcaagccctgttaaaacaacaa ggcttgtgggcgccgctgtctaatgacagtaaagggaagagcgatgatgctgagatggatgtcatggaca agaaggcacactccacaatcatgttgtgtcttgaagacgaagtcatcattgaggtttcaagagaaaccac ttctgtcaatctgtggaagaagttagagaatttgtatatgacaaagtttctacagaacaagctgcttctg aaacgacgcctgtttgcattaaggatgcaagaaggtacaccactcaaagatcacttagaaaagttgaagt cagtattactagaactgcggaatattgattttaaagttgaagatgaagatgctgctttgcttctgttggt acctttaccactatcatatgagaactttgttgaatcatttatagtgaataaagttacagttactttggaa gaagtcagatctacgcttcacaggatctactgctatagcagaaaatgacactaagtctcaatatgatgtt gctcttgtggctgctggaaacgcccacaactctgatgtgtgggttctggatacaaggggcatcatttcat atgtgtccaaggagagagtagttctcaacatatgtacatgtagaaaacggctgcatcaagatggctaaca gttctgtctgttaggttgctggaatcggctctatacagatcatgacacatgatggcagattttgcacact gaacgatgtcagacatgttccgtcgacggagaaaactttgatatcactgagtctgcttgatagcaaaggt ctaaaatattctggtggagacagaattttgcaggtctgtcaaggttgttataagtggtcctctttatata ctacatgggttcactgttataggttcaatgaatgttgcatcttcagagattcacaaggaggatatgacta agctatggcctatgaggcttggtcatatgagtgaaagagggatgaaaattttgtccaaggaagatctttt gtgtggccatgaggtcaagagtcttgagttctgtgagcattgtgtgtatgggaagcttcaccgtagtaag ttccctaaggctgttcacataaccaaaggtacattagattatattcactctgattgttggggtccagctc aagttgaatctctaggaggtcatagatattttgtgtcgatgattgatgattactctaggaagacttgggt gatcaagctaaaacacaaaagtgaagctttcaataacttcagggagtggaaaattttggtggaaaatcaa actggaaagaagatcaagaggctgcggacagacaattgtctggagttctgttcatcagagttcaatcagc tgtgtaaggatgaaggggttgctcgtcatcacactgtcagagatacaccataccagaacgttgtagctga acagatgaatcagactttattgaagagagctaagtgtatgctctctaatgcttgtttagaaaaaagattc taggctgaagcagtaaatatagcctgttacttgataaatcgtgggccgcacacatgaatcaagtgtagga cacctgcagagatgtggtctggtaaatctgctgattactctaatcttaagatttttggctgcacagttta taatcatgtaaatgaaggtaaattggagccaacagcaaggaagggagtatttctaggctatggagatgga gtcaagggattcagggtttggtctccatcagagaagagagtgattttgagaaggaatgttgtctttgaca aagtttctatgctctgattttcagagaagtctacaactacagaagagaacagtagctttgataaataggt ggagctgacagctaatcagaaagctgatttacagaaaccagaagacagtaaggggctacaggcagcagat gggtcacctgacactatcaagcaagaatcaaaaccttactgtatcgctcaaaaccgaacaaagaggattg gagttggaccaccgcaaagatacggttatgaggatatggtaggattctgtcttgaggatatggtagggta tgctttacaggttgcagaagaggtagatactcatgagccagccacttatcgagaagttttttctgggatt gaggctgagaaatggtttcctgcaatgagagatgagatggaatctcactgtaaaaatcagacatgggatt tggtcaaacgaccaccgggaagaaagattgttacttgcaagtggatcttcaagataaaggaagggatatc accagtagaaggggttaagtacaaggctcgagttgttgcgagaggtttcagccaaagagaaggggtagac tacaatgagattttctcacatgtgatcagacacacttcaatcagaatgctgctagcaattattgcaaatc aggacttggaacttgaacaacttgatgttaaaactgcttttcttcatggtatattagcagaagaaatata catgactcaatcaaatggtttccaagttcctagaaagggagatcacgtctgtaagttgaacaagtctttg tatggcctcaagcagtctccaggcagtggtacaagaggtttgacaactacatgatggagctgggctacaa caggagtccgtatgattgctgtgtttacactagcaagctgaaagatgaatcatacgtctatctggtgctc tatgtagatgacatgttaataaatgccaaacagatgtctgatattcagagattgaaagatttgttgagtg ctgagttggagatgaaggatctgggagcagcaaagaagattctagggatggagattctcaaagacagaag tcagaataagcttttcttgtcatagaaaggctacattcagaaggcgttggataggtttggtatgttatca gcaaaacctgttgatactccttttgctgctaatattcctctcaccatgtttgctccttagtctgaagagg acaaagagtatatgtctcgtgttccttacgctaatgctgtgggatgtttgatgtatgctattgtctgtac aagaccagatcttgcacctgtagtcagtgatgtcaataggttcatgggacaatcatgaaaagaacattgg ctggctgtgaaaaggattttcaagtacctgaaaggtacgtctgatgttggactcctatacagaggtgagg ctctgagcctgattgcaggctattctaattcggattatgcaggagatatagacagcagaagatcaatgac tggttatgtgtttgccttgggtaattctgtaattagctggaaagcaactctactgccaactgtgacgctg tcaaccacagaagcagagtatatggcttcaacagaagctgctaaagagggtatttggctgaaaggattgg tcagtgatatccgtttgcatcaagatcaggctacaatgtattgtgacagtttgagtgcgatttctttagc caaagatcatgtccatcatgagcggaccaagcatattgatgtgagatatcattttctgagaaatgagaag aggtttcaagtgaagaaggtagggactgctgataaccctatagatatgttcactaagctggttccttaga gcaagtttaaacattgtttagacttgctgaatgtctcaagctgttaatcgccctgaagggcaaacaggcc cctaacggggcagcaagtccctggagggacatctggcctctgaataggcataaggctccttatgaagcat ttggccccagtggagcgttctggtttctgatgaagcattttggtcttggtaggcgttctggcttctgaat aagtattctggctcagtgaagcatctgacttgacgaaggagttggcttgcaggggcatctggtccctgat ggaatatctgaggcaaatgagaattttggtacatatctctgctacttttggttggtacgtctagcattgg gataatgcatatagtacaaccgtctggtagcttaatctagtacatctatctaagggcgaagtctggtaca acactgtgagcagtgtgtcaggtacagctgtttggaggattcaagtcacgttggagattt1