;ID ATCOPIA33_I DNA ; ATH ; 4261 BP ;XX ;DE Internal region of the ATCOPIA33 LTR retrotransposon. ;XX ;AC AC006219 ;XX ;DT 16-DEC-1999 (Rel. 4.0, Created) ;DT 16-DEC-1999 (Rel. 4.0, Last updated, Version 2) ;XX ;KW LTR retrotransposon; COPIA superfamily; copia-like polyprotein; ;KW reverse transcriptase; RNaseH; ATCOPIA33_LTR; ATCOPIA33_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4261) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (December 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA33_I is an internal portion of ATCOPIA33, a recently active ;CC copia-like LTR retrotransposon; it is flanked by 5-bp duplications ;CC of a target site. Its long terminal repeats, deposited in Repbase ;CC Update as ATCOPIA33_LTR, are 94% identical to each other. ;XX ;DR Positions 33321 29061 Accession No AC006219 GenBank (rel. 112.0) ;XX ;SQ Sequence 4261 BP; 1431 A; 667 C; 1070 G; 1093 T; 0 other; ATCOPIA33_I aattggtatcagagctctggttcatcaataatctgaagatcggttataagaatgacggattcgaaagtaa agattgctcaattcgatggatagggtgacttctccctctggagaactcggatgttcgctcacctcagagt gttggggctaaagactgctctggtggagcaaccaccacataaacctctcacggaagaagaagaaggagat cctgcaaagaagaagaagtggatcgaggaggaagaggctagaatagagcgagatgagaaggcgatggaca ttatattcatcaatgtcgcagataaggttctaagatcaagaaaacattcaaaatctgcagcggaagcttg gggaacgcttgagagattgtatttggtaaagattttaccaaatcgtgtatatcttcaactaaaggtttac aactacatgatgcaagaatcgaagactcttgaggaaaactttgatgagttcttaaagatgattttagatc tgaataatcttcagattcaagtcccaaatgaagttcaagcaatcttgatcctgagtgctcttccagagaa gtatgatatgttgaaaaaaacatcgaaatatggtagagaaggtataaggctggatgatgtaataagtgtt gctaagtcaaaggagctggagctgagggatagcttaggtgattcaagaccggttggtgaaggcttgtatg tgtgaggaagaccacatgcaaagggtaatgatcaaatgtttgggaaagagggcaagaaaatctgttggat ctgcggtaaagagggacattttaaaagacagtgctataagtggattgagaggaacaaggctaattctcaa caaggagaatcagctctggttaaagatgatgcacaagatctgattggactagtcgcatctgaagtgaatc tcactgagaatgcagatcaagatgagtggataatggacacaattgctcgtttcacatgactccaagaaga gatgtgctcattgagtttcaggaaattggaacagggatggttagaatggcaaacaacttattcacagagg tcaatggtattggcaaagtgaggtttgtgaactcggatggtaccacctttatgcttcacgatgtcagata tatgccagggatgtcaaggaatctgatctccatgggaactctggactctaaaggatgtgagttcgaaggc aaaaacggtgtgttaaaggttatgaaaggggatatcacgtacatgaaaggcacaagaagagagtcttaat acattttacaagcaggagctaagaagtcagagtgtctggcacttgaagagaaacctgcagaagaagatct aacaaaactttggcacaatcgtcttaggcatgtgggacagaaagggatggatggcctagcagagaaaggg tgttttggaaaagacaaagtatcaagtattaagttctgtgaggattgtgtgtttggaaaaacacacaaag ttagcttcagctcagcacaacacgtcactaaagagaaactagactatgttcattcaaatttatggggctc tccaaacgtcccattgagtcttggaaggtgtcaatacttcatctccttcactgatgattggtccaggaag gtctggatctatttcttgaggacaaaggatgaagcatttgacatgtttgttcaatggaagaagatggttg aaacacaaagtgaaaggaaagtaaagaagcttcgtacggataatggtcttgagttctgcaataatagatt tgatactttctgcaagaaggaaggaatggtgagacacagaacctgtgcctatacacctcaacaaaatgga attgtagagagattaaatagaacgattatgaacaaagtcagaagcatgctcagtgagagcggattaggac aacagttttgggttgaggcagcttccacattagtgtacctaataaatagaacaccatcatctgctattga ttttcacattccagaagagatgtggacttcaactgtgccagacttatcaggtttgcgaagatttagatgt ctcgcttacattcactcaaatgatggtaagctaaatttgagggctaagaaaagaatctttaccggatatc cagaaggagttaagggcttcagggtttggttgttagaagacaggaagtgcaccattagcagaaatgtggt gttcaaagaggatgtgttgtacaaggatatcatggctcagaaacagtcatgtatgatctctaacccttta ccaatgttatctgataaagctacttgtgatattgcaggaaataacaggtctgaagaggatatttcttaag gtggagctttaaagcaagatactgtgataaattcaggacaaagttcagtggaaatgtcaacaagagttga gaatcaaatgtcagggagctatcagatagctaaacacaggccaagaagacagatcatgagaccaaccaga ctagaagactaatacactgaagaagcagaattagatgagatagccggatacgcatacttcgtaacagaag acggtggcaagtctgagccctccagttttcaggaagcattaagagatgctaatagtgacaagtggttcac agctgcagatgaagagatagagtctctcatgaagaacaaaacttggtcactagtagacagagatgaaaaa cagaagcctataggctgcaagtgggtcttcaagagaaaacctggaatagtgggtgtggaaggtcctcgat ttaaagcaagagtagtagctaaaggttactcacagaaagaaggggttgactatcaggagattttttcacc tgtggtgaaacatgtgtcaattcgttttctgctcagtattattgctcatttggatatggaactccaacag atggatgtcaagactgctaacttgcatggatacttataagagaccatttacatggatcagccagaaggtt atgtagatgaaaaatatccaatgaaggtgtgtctgctacaaaggtcgctatatggtctcaagcagtcacc aaggcaatggaataatcgattcaacgagtttgtgtagtcacatggatatgaaaggagtcaatatgatagt tgcgtttactctaagagattacagagtggagactatgtctatatgctgctatatgtcgacgatattttaa tagcttcaaaggataagaatcatatagatgagttaaaaacacttctcaactcagaatttgaaatgaaaga tctaggagaagctaagaagatccttggaatggaaatatcaagagatagacagaaaggtactctcactgta tctcaagatggatatctcctaaaggtccttggaacttatgggatggaccaatccaaaccaataggaacac caatgggaatacacttcaagttgcgtgctgccacagatgaagaattaaggattcagtctgaatctatgag gggtgtgccatatcaaagtgcagttggaagcttaatgtatgcaatgataggtaccagaccagatctcgca tatcctgtgggattggtatgcaggtacatgagtaaaccactcaagcaacattggcaagcagttaagtgga ttctaaggtatatcagtgggtctatcaagaagaagctttgctataaaaacaaaggagattttgtgattga agggttttgtgattcagactatactgcatgacaggagaagatctacatcaggtatagtttttacttagga ggcaacgttatcagctggaaatcaagtctgcaaaaggatgtggcattatcgtctactgaggctgaataca tggctctaacagaggcagctaaggaaacagtttggttactaggactgatgaatgaacttgggtttaagca ggattcagtaaatattcactgtgactctaagagtgcgattgctttggcaaggaacacagtgttccatgaa aggactaaacacatagataccaagtatcatttcataagagatttggtaagtgatggggttataaatctgg ttaagattgcaacagagtgtaatcctgcagatatctttactaagacagtaccagtgggtaagcttcaaga agcgttagagcgactcaggattacagaagcataatggagccataaggctcctcaacaagctgagtgggtt tactcacgtgatctgaagcttagtgggtttaatcaaaaaggcttagaaggctgagtgagtttagtcaggt atacggagttggagtccaagttcggctgctaggtcgctgcattggggtcaaggtggagaac1