;ID ATCOPIA32B_I DNA ; ATH ; 4239 BP ;XX ;DE Internal region of the ATCOPIA32B LTR retrotransposon. ;XX ;AC AC006570 ;XX ;DT 16-DEC-1999 (Rel. 4.0, Created) ;DT 16-DEC-1999 (Rel. 4.0, Last updated, Version 2) ;XX ;KW LTR retrotransposon; COPIA superfamily; copia-like polyprotein; ;KW reverse transcriptase; RNaseH; ATCOPIA32B_LTR; ATCOPIA32B_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4239) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (December 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA32B_I is an internal portion of ATCOPIA32B, a recently active ;CC copia-like LTR retrotransposon; it is flanked by 5-bp duplications ;CC of a target site. Its long terminal repeats, deposited in Repbase ;CC Update as ATCOPIA32B_LTR, are 97% identical to each other. ;CC There is 84% nucleotide identity between ATCOPIA32_I and ;CC ATCOPIA32B_I. ATCOPIA32_LTR and ATCOPIA32B_LTR are 75% ;CC identical to each other. ;XX ;DR Positions 51142 46904 Accession No AC006570 GenBank (rel. 112.0) ;XX ;SQ Sequence 4239 BP; 1374 A; 651 C; 1064 G; 1150 T; 0 other; ATCOPIA32B_I gattggtatcagagcaccatgttggtgttctttgtggttctgaaaagggtttaagatcttgaaccatgtc tacaactagaatagaagttgagaagtttgatggtcgttgtgattacacgatgtggaaggagaactgttgg ctcatatggatatattgggtctgtgtactgctctcaaagaatcagagagcaagggtgaggagttatcagg tccagacgaatttgatgaagactataaagagaagctcgaaaagttcaaagctttagaagaaaagaagaga aaggctaggagcgccatagttcttagtgtcattgatagagtcctaaggaagataaagaaggaatcgacag ccgctgcaatgttgttagccttggataggctatacatgtcgaaagcctttccaaataggatctatctgaa gcagaagctttacagctacaagatgtctgaaaatctgtcagtagaaggtaatatcgatgaattcctttag attattacaaacttagaggacatgaatgttaatatctctgatgaggatcaagctattctgctgttaacat cgcttccaaaagcttttgatctgcttaaggatactcagaaatatagctcgggtaagtctatattaacctt agatgaggttgttgcagccatctactctaaagagttggagttagggtctgtaaagaagagtatcaaggtt caggctgaaggtctttttgttaaagacaagaatgaggctaaaggaaagggtgaacaaaagggaaagggga aaggaaagaagggcaaatccaagaagaaacccgggtgctggatttatggtgaagaaggacacttcagagc ttcctgtccaaaccagaacaagccacagttcaagcagagtcaagtagcaaagggagaatccttaggagga aaaggaaacatagctgaagcagctggttattatgtatctgaggcgttgtcatcaactgatatccgtttag aagatgaatggatactagatacaggctgtagctatcacatgacctacaagagggaatggtttgaagagtt cgatgaagaagcaggaggttgtgtcagaatgggaaacaagactgtttctcgggtaaaaggaattggaacc atcagggtcaaaaatgatgatggtctgtctgtggttctcacaaatgtgagatatattcctgatatggata gaaatctgctatctttggggacttttgaaaaggcaggttacaagtttgagtcagaaaatggaatcttaag cattaaaactggaagtcaagtgcgacttactggaagaaggtatgacactctttatttgcttaactggaaa cctgtagctagtgaatcacttgatgtagttaggagaatggatgatactgtgttatggcatagaagtttat gtcatatgagtcgaaagaacatggagattttggtcaagagaggacttctagatggtaagaaagtctcagt tctcgacacctgcgaggactgcatttatggtaaagccaagagaattggtttcaattcggctcatcatggt accactaagaagttagaatatgttcattcagacctttggggagctccattagttccattctcattaggga agtgccaatacttcatgtcagttattgatgattacactagaaaggtgtgggtttattttctgaaaaccaa agatgaagccttcgagaagtttgttgattgggtcagtttggttgagaatcagagtgacaatagagtgaag actcttagaacagacaatggtctgtaacaagttgtttgatggtttttgtgaatcaaaagggattcaaagg cacagaacgtgtgcttacacacctcaacagaatggggttgctgaacgcatgaatagaaccatcatggaga aagtgagaagcatgctgagtgattgaggtctacctatgaagttttgggcagaggcaactcacactgcagt acttctcatcaataaaacaccatcatcagctcttaattttgagattcctgacaagaagtggtcaggaaaa ccaccggtttacagttatctgagaaggtatggatgtatagctttcattcactctgatgatggaaagcttg aaccaagagctaagaagggagtgtttattggttacctgttggagtaaaagggtataaagtgtgactgctg gatgaaagaaagtgtgtggttagtagaaatgtcatctttcaagaaaatgttgtgtacaaggatctgatgc tgacacgtgagaatgtgtctagtgaagaagatgatcaaactggatcatatctagatcttgaccttgaagc agaagatgatgttatctcaggtggagatcaagggatgtcttagacaactcctgtaccagaaagtccagta cacgctactccactcagtaaaactgcaaatgataatggtgtttctgaagtaaatcagtctcctccgagtt atcatttagtaagagacagagacagaagagagattagagcaccaagacgttttgatgatgaagattacta tgctgaggcattgtatacaactgaagatggtgatgtagttgagccggagagtttcaacgaggcaaaaatg gactctaattggaacaaatggaagcttgctatgaatgacgagatcgattctcaagagaaaaacaacacgt ggacagtagtcacgagacctgagaatcaaagaatcattggctgcaggtggatctacaagtataagcttgg gattctgggtgtagaagaaccaagattcaaagcaagacttgttgccaaggggtattctcaacgagaagga attgactatcatgagatctttgctcatgtggtaagacatgtatctataagggttttgctgactatagtat cacaagaggacttggaactagagcagttagatgtgaaaacagcttttctgcatggagagctgaaggagaa gatctacatgtcacctccagaaggttatgagtcaatgttcaaagagaatcaggtatgtcttttgaataaa gccctgtatggactgaagtaggcaccaaaacaatggaatgagaagtttgacaacttcatgaaagagattg gttttgtgaaaagtcagtatgataactgtgcttacactaaggtgctgcagaacggttcaatgatgtatct tctcatctatgtggatgatatgcttgtagcagcaaaggataaagaagcaatagcctcttaaaagtctgag ttgagcaagcgttttgagatgaaagatttgggggctgctaagaagatacttggtatggagatcaacagaa acagatcagagggtgctctatggctgtctcaggaaggttacttgaataagattcttgaaacttacaatat gtcagaaccaaagcctgcaatgactccacttggagctcattttaagtttcaagctgcaacagaacagaaa ctggtcagagatgaagactttatgaagtttgttccctactcaagcgctgtgggaagcatcatgtatgcca tgattgggacacgtcctgaccttgcttatccagtgggtatcgtcagccgcttcatgagtaaaccgagtaa agatcattgggttggagtgaaatgggtgttgagatacattaaagatactttgaaaacaagactgtgttac aagaaaagctcaagtttcaagattgtgggctattgtgatgcaaattatgttgatgaccttgataagagaa gatcaatcactggtcttggttttacacttggtggaaacaccataagttggaagtcaagtctacaaagagt tgttgctcagtcaacaacagaatcagagtacatgtcacttaatgaagcagtgaacgaggcagtttggtta aaaggtttgttgaaagacttcaggtatgatcagaagagtgtggaggtcttctgtgattctcagagggcta ttccactctcgaagaacaatgtgcatcatgaaagaaccaagcacattgatgttaagttccattacatccg agagatcatatcagatggaactgttgaggtgttgaagataactacagagaagaacccagaggatatattc accaaagttttggcagtgagtaagtttcaaatagctttgaacttgctccgtgtcaagtctgagtagtaaa ctcggagaatccgagactagaatccagaggctagaatcaggtactctttctctctcttgtaactctaaac agtttgaatgtttgtggcttatgctatctagtggagatt1