;ID ATCOPIA31_I DNA ; ATH ; 4084 BP ;XX ;DE Internal region of ATCOPIA31 copia-like LTR-retrotransposon. ;XX ;AC AB022213 ;XX ;DT 03-MAY-1999 (Rel. 3.3, Created) ;DT 16.DEC-1999 (Rel. 4.0, Last updated, Version 2) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW copia-like polyprotein; ATSASHA6LTR; ATSASHA6I; ATCOPIA31_LTR; ;KW ATCOPIA31_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4084) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (May 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA31_I is an internal region of a putative active ATCOPIA31 ;CC copia-like retroelement flanked by identical ATCOPIA31_LTR ;CC LTRs and 5 bp-long target-site duplication. ;CC ATCOPIA31_I ORF (position 46-4050) encodes 1334 aa-long copia-like ;CC polyprotein. ;CC The name has been changed from ATSASHA6I to ATCOPIA31_I (Dec.16,1999). ;XX ;DR Positions 29348 25265 Accession No AB022213 GenBank (rel. 110.0) ;XX ;SQ Sequence 4084 BP; 1351 A; 605 C; 1156 G; 972 T; 0 other; ATCOPIA31_I gtggtatcagagcttgtcacgagcttggtacaaaagagaaacaccatgagtgaaaaggagtcggtgatca taccaaaattcgatggtgattatgagcattgggctatgctcatggagaatctgataagatcaaaggagtg gtgggatatcattgagacgggaattccaaggccggagagaaacgtgatcctcaccggagcgcaaagaaca gagttggcggagaagacggtgaaggaccacaaagtgaagaactatctatttgcatcaatagataagacga ttctcaagacgattctgcagaaggagacgtcgaaggacttgtgggagtcaatgaaaaggaaatatcaagg gaatgatagggttcaaagcgctcaactgcagaggttacggagaagctttgaagttcttgagatgaagatt ggagaaacaatcacgggttacttctcaagagtgatggaaatcactaatgatatgcggaatctgggagaag acatgccagactccaaagtagtggagaaaattctgagaacattggtcgaaaaattcacatacgttgtgtg tgctatagaagagtctaacaacatcaaggagcttacggtggatgggcttcaaagttctttaatggtgcat gagcagaacttgagtagacatgatgtggaagagagagtgttaaaagctgaaactcaatggagaccggatg gaggaagaggcagaggaggaagtccaagccgaggaagaggtagagggggttaccaaggaagagggcgtgg ctatgtgaacagagacacggtagagtgtttcaagtgccacaagatgggacattacaaggcggagtgtcca agttgggagaaagaagcgaattatgttgagatggaggaagatctgcttctcatggctcatgtagaacaga ttggtgatgaagagaaacaaatttggttcttggactcgggatgcagtaaccacatgtgcggtacaagaga gtggttcctcgagttggatagtggttttaagcagaacgtgagactaggagatgatcgaagaatggcggta gaaggaaagggaaagctgagacttgaagttgatggaagaattcaagtgatctcagatgtgtactttgtgc cagggttgaagaataacctctttagcgtgggtcaactacaacaaaaagggttaagattcatcattgaagg tgatgtgtgtgaagtgtggcacaaaacagagaagagaatggtgatgcactcaacgatgacaaaaaatcgc atgtttgtggtttttgcagctgtgaaaaagtcaaaggagactgaagaaacaagatgccttcaagtgatcg gcaaagctaacaatatgtggcacaagagatttggacatctcaaccatcaaggcttgagatcgctagctga aaaagagatggtaaaaggcttaccaaagtttgatcttggagaagaagaagcagtttgcgatatatgctta aagggtaagcaaatccgagagtcaattccaaaggagagtgcgtggaaatcaactcaggttctgcagcttg ttcacacagacatttgtggaccgataaatcctgcatcaaccagtgggaaaaggtacattttgaactttat agatgactttagccggaagtgttggacttatttgttgtcggagaagtcagaaacatttcagttcttcaag gaatttaaggctgaagtcgaaagagaatcaggaaaaaaattggtatgtttgcggtcagacagaggaggag aatataattcgagggagtttgacgagtactgcaaggaatttggaatcaagagacaactcaccgcagcata tacgccacaacaaaacggggtcgcagaaagaaagaatcggagcgtgatgaacatgacgcggtgtatgtta atggagatgtcagtgccaagaaagttctggcctgaagctgttcagtatgcagtgtatatactgaatcgga gtccgtcaaaggctttaaatgacataactccggaagagaagtggagtagctggaaaccatcagttgagca tctaagaatatttggcagcctagcatatgctcttgtcccgtaccagaaaagaatcaagcttgatgagaaa agcatcaaatgtgtgatgttcggtgtaagcaaggaatccaaagcctatcgtctctatgaccctgcaacag gaaaaatattgattagtcgggatgttcagtttgacgaagaaagaggctgggaatgggaagataagtcgct ggaggaagaacttgtgtgggacaattctgatcatgaacctgcaggagaagagggtccagaaataaaccac aacgggcaacaagatcaagaggaaacagaagaagaagaagaaacggtagcagaaacggttcatcaaaatc tcccggctgttggaacaggaggtgttagacagagacaacaaccagtttggatgaaagattatgttgttgg aaacgcccgggtgctcataacacaagatgaagaagatgaagttcttgcgttgttcattggaccaggtgat ccggtttgctttgaagaagcggctcaattagaggtgtggagaaaggcgatggaagcagagataacctcca tagaagagaataacacatgggagttagttgaattacctgaagaagcaaaggtgattgggctgaagtggat tttcaagactaaattcaatgagaaaggagaagttgataagtttaaagcaagactggttgcaaagggctat catcagagatatggagtggatttctatgaggtatttgcaccagtagctaagtgggatactatcagattga ttcttggcttagctgcagagaaaggatggagtgtttttcaactagatgtgaaaagtgcgtttttgcatgg agacctaaaggaagatgtgtttgttgagcagcctaagggattcgaagtggaagaagaatccagcaaggtg tacaaattgaagaaggccttatatggcctaaaacaagctccaagagcttggtacagccgtatagaagaat tctttggtaaagaagggttcgaaaagtgctactgtgaacatacactgttcgtgaagaaagagagaagtga cttcttggtggtaagtgtgtatgtggatgatcttatttacacaggaagctcgatggagatgattgaaggg tttaaaaattctatgatggaggaatttgctatgactgatcttggaaagatgaagtacttcttgggagttg aggtcatacaagatgaaagaggtattttcatcaaccaaagaaagtatgctgcagaaatcattaagaagta tggaatggagggatgtaattcagtcaagaatccaattgtgcccggacagaagttaacaaaagctggagct ggtgatgctgttgatccaactgagtttaagcaactcattgggagcttaaggtacctaaccaccactcgac cagacttgattttctctgtaaatctagttagtaggtacatggaaagtccaaatgagcaacacttgttggc tgtgaagagaatcttgaggtacgttcaaggtacgttggatctcgggattcaatatgaacgtggtggtgct acagagttggttggcttcgttgatagtgattatgccggtgacgtcgatgacagaaagagcacctctggtt atgtgttcatgttaggtggaggagctatagcttgggcatctaagaagcaaccaattgtgacattatcaac aacggaagcagagtttgtgtcagcttcttatggtgcgtgtcaagcggtatggctcagaaacgttttggag gagattggctgcagacaagaaggaggcacacttgtgttctgtgataacagctccaccataaagttgtcaa agaatcctgtactacatggaagaagtaagcacattcatgtgaggtatcattttctcagagagttggtgaa ggaaggaactattagacttgactattgtactactacagaccaagttgcagacatcatgactaaggctgtg aaacgtgaagtgtttgaagagcttcggggaagaatgggagtaagaagaagagaagaataaaccgaaaagt gtgttttcggtttaagggagggat1