;ID ATCOPIA2I DNA ; ATH ; 4496 BP ;XX ;DE Internal region of ATCOPIA2 copia-like LTR-retrotransposon. ;XX ;AC AF069442 ;XX ;DT 12-APR-1999 (Rel. 3.2, Created) ;DT 12-APR-1999 (Rel. 3.2, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ATCOPIA2LTR; ;KW ATCOPIA2I. ;XX ;OS thale cress ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Charophyta/Embryophyta group; ;OC Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; ;OC Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; ;OC Arabidopsis. ;XX ;RN [1] (bases 1 to 98913) ;RA Parnell,L.D., Gnoj,L., de la Bastide,M., Hameed,A., Habermann,K., ;RA Schutz,K., Huang,E., Gottesman,T., Dedhia,N.N. and McCombie,W.R. ;RT Genomic sequence of BAC T4I9 from Arabidopsis thaliana, Chromosome ;RT IV, near 16.6 cM ;RL Unpublished ;XX ;RN [2] (bases 1 to 98913) ;RA Gnoj,L., Parnell,L.D., de la Bastide,M., Hameed,A., Habermann,K., ;RA Schutz,K., Huang,E., Gottesman,T., Dedhia,N.N. and McCombie,W.R. ;RT Direct Submission ;RL Submitted (29-MAY-1998) Lita Annenberg Hazen Genome Sequencing ;RL Center, Cold Spring Harbor Laboratory, Cold Spring Harbor ;RL Laboratory, Cold Spring Harbor, NY 11724, USA ;XX ;RN [3] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA2I is flanked by 99% identical LTRs, ATCOPIA2LTR, and by ;CC 5 bp-long target site duplication. ;XX ;DR Positions 66285 70780 Accession No AF069442 GenBank (rel. 109.0) ;XX ;SQ Sequence 4496 BP; 1232 A; 1210 C; 818 G; 1236 T; 0 other; ATCOPIA2I atggtatcaagagcttagatccataaaaaaataaaaaaaattaaaaaaaaatttttcctctttcttcgtt ctctctccttcaatggctactcacgctgaagaaatcgttctcgtcaacaccaacatcctcaacgtgaaca tgagtaacgttaccaaactcaccagcactaactacctcatgtggagccgccaggttcatgcgctcttcga tggctatgaactcgccggttttctcgatggctctacacccatgccgcctgcaaccattggcacagatgcg gttcctcgtgtcaatcccgactacactcgctggagaagacaagacaagctcatctacagtgcaatccttg gagccatctctatgtccgtacaacctgcggtatctcgagccactacagcggctcagatctgggagacact tcgcaagatctatgcgaatccaagctatggtcatgtcactcaactccgtacgtagctgaagcaatggacg aagggtgccaaaaccatcgatgactatatgcaaggattcatcactagattcgatcaacttgcgcttcttg gaaaacctatggaccatgacgagcaagtagaacgtgtgctggaaaatctgcctgatgattacaaaccagt gatagatcaaattgccgccaaagataccccaccgtctctcacagagatccatgagaggctgataaatcga gagagcaaacttcttgctttgaactcggcagaggtcgtaccaatcactgccaatgtcgttactcaccgca acaccaacaccaaccgtaatcagaacaatcgtggagacaaccgcaactacaacaacaacaacaatcgctc aaactcttggcagccatcgtcttctggctctcgatccgataatcgccagcccaaaccctacttgggccga tgccaaatatgtagcgtgcaaggacacagtgccaaacgctgccctcaacttcatcaattccaatcaacca ccaatcaacagcaatcgacttctccgttcactccatggcagccccgcgccaatctcgctgtcaactctcc atacaatgccaacaactggcttcttgacagcggagcaacccaccatatcacgtcggacttcaacaatctg tctttccatcaaccttacaccggtggtgatgatgttatgattgccgatggatccacaattcccataacac acactggttctgcctctctacctactagttctcgctcactagatcttaacaaagttctatatgttccaaa tatacacaaaaacttaatctctgtgtatcgcttatgcaacactaatcgtgtctctgtggaattctttcct gcatcctttcaggtgaaggatctcaacacgggggtcccattactccaaggcaaaactaaagatgagttgt atgagtggcctattgcatcgtctcaagcggtatctatgtttgcgtctccatgctctaaagctactcattc ttcatggcattcccgtctcggccatccttcattggcgattttaaattcagttatttccaatcattcactt ccagttttaaacccctctcataaacttctttcttgctcagattgttttatcaataaaagtcataaagtgc ctttttcaaattcaacaatcacttcgtctaaaccattggaatacatttattcggatgtgtggagttcccc aattctttctattgataattatcgctattatgtcatctttgttgatcatttcacccgttatacatggtta tatccattaaaacagaaatctcaagtgaaagatacgttcattatcttcaagagtcttgtggaaaatcgtt ttcaaacaaggattggtacactttattcagataatgggggcgaatttgtggtcttacgggattatttatc gcaacacgggatctctcatttcacctctccaccgcatactccagaacacaatggtctatcagaaagaaag catcgtcacatagttgagatgggtctcaccttactctctcatgcctctgttcccaagacgtactggccgt atgctttttctgtggcagtttaccttataaatcggcttcccacaccgctacttcagcttcaatcgccgtt tcagaaactttttggacaaccgccgaattatgagaagctcaaagtttttggatgtgcctgttatccatgg ttaagaccgtacaatcgtcacaagctagaagacaaatcaaaacaatgtgcattcatgggttattctctta ctcaaagtgcttacttgtgtcttcacattcccactggcagactctacacatctcggcacgtgcagtttga cgaacggtgctttcccttctctacaacaaattttggtgtatccacgtcacaagaacagcgttctgattca gctccgaattggccatctcatacaactctacccacaacaccgttagttttgccggctcccccgtgtttgg gtcctcaccttgatacgtcgcctcgtccaccgtcgtcgccgtctccactatgcaccactcaggtatcgtc ttctaacttaccttcctcttcgatttcttctccctcttcctctgagcccactgctccaagtcataatggg ccgcaacccacggcccagccacatcaaacacaaaactcaaattcaaatagcccaattttaaataacccaa atccaaacagcccaagtccaaatagcccaaatcaaaatagcccattaccacaaagcccaatctcatcacc ccacataccaacaccttcgacgagtatctctgaaccaaactcgccgtcctcctcatcaacctctacgcct ccgttacctcctgtgttacctgctccaccaattattcaagtcaacgctcaagctccggtcaatactcatt caatggctacaagggcaaaggatggcattagaaaacccaaccaaaagtactcttacgccacgtcactggc tgcaaattcagaaccacgcacagcgatacaggcaatgaaagatgatcgttggagacaagcaatgggatca gaaataaatgctcaaatcggcaatcatacatgggatcttgtaccgcctccaccaccatctgtcacgatcg ttggttgtcgttggatattcactaagaaattcaattcggatggctcactaaatcggtataaggcaaggct tgtcgccaaaggttacaatcaaagaccgggtcttgattatgcggaaacctttagtcctgtaatcaaatca acttccattcgtatcgtcttgggtgtggctgttgatcgatcttggcctatccgtcaattggatgtcaata atgcatttctacagggtacacttaccgacgaagtatacatgtcgcaaccaccgggttttgttgataaaga tcgtcctgattatgtctgccgcctcaggaaagctatttacgggctgaaacaagctcctagagcatggtat gttgaacttcggacttatttactaacggtgggttttgtgaattccatctcagatacgtcactttttgtgt tgcaacgaggtcgatcaattatctatatgcttgtctatgttgacgacatattgatcacagggaatgacac ggtcttgttaaaacatactctcgatgcattgtctcagcgtttttctgtcaaagaacatgaggatctacat tattttctgggtattgaagcaaaacgagtcccacaaggtcttcacctcagccaacgtcggtacacacttg atcttctcgctcgcaccaatatgctaaccgcgaagccggtcgcaacaccaatggcaacatcaccaaagtt gacattgcactccggtaccaaactgcctgacccgacagaatacagaggcatagtgggcagtttacaatat ctagcattcactcgtcctgatctctcttatgcggtcaaccgtctgtcacaatatatgcatatgccgacag atgaccattggaatgccctgaaacgtgttctgcgatacttagctggaactccggatcatggcatatttct taagaaaggcaacacattatcattacacgcatactctgatgcggattgggccggcgataccgatgactat gtctccactaatggctacattgtttatctcggtcatcatcccatctcttggtcctctaaaaagcagaaag gtgttgtgcgctcatctaccgaagctgaatacaggtcagtggcaaacacttcatctgagctacaatggat ttgttccttattgacagaacttggtattcaattgtcacatccaccggtcatctattgtgacaatgtggga gcaacttatctatgtgccaatccggtgtttcattctcggatgaaacatatcgcgttggattatcacttca tccgtaaccaagttcaatctggtgcacttcgtgttgtccatgtctccactcatgatcaattagcagacac tcttacaaagcctctgtcccgcgtcgcttttcagaacttctctcgcaagattggagtcatcaaagtccct ccatcttgtgggggcg1