;ID ATCOPIA29_I DNA ; ATH ; 3399 BP ;XX ;DE Internal region of the ATCOPIA29 LTR retrotransposon. ;XX ;AC AC006136 ;XX ;DT 16-DEC-1999 (Rel. 4.0, Created) ;DT 16-DEC-1999 (Rel. 4.0, Last updated, Version 2) ;XX ;KW LTR retrotransposon; COPIA superfamily; copia-like polyprotein; ;KW ATCOPIA29_LTR; ATCOPIA29_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 3399) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (December 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA29_I is an internal portion of ATCOPIA29, a copia-like ;CC LTR retrotransposon recently integrated in the genome; it is ;CC flanked by a 5-bp target site duplication. Its long terminal ;CC repeats, deposited in Repbase Update as ATCOPIA29_LTR, are 90% ;CC identical to each other. ;XX ;DR Positions 38729 42127 Accession No AC006136 GenBank (rel. 112.0) ;XX ;SQ Sequence 3399 BP; 1182 A; 572 C; 654 G; 991 T; 0 other; ATCOPIA29_I cgttatcagcgcgctttaaaagaaacaatgaatggtggagaaatatgcttggcagacaatgcaactaatc atactattttaaaaaataagagatatttctcttttttgacaatgaaagaagcaagtgtaactatcgtaac aggtagtgcaaagataattgaaggctttggaagagcaaatatagcaatgcctatgggaacaaaattagag attgtggaggccttatactctcctaaatctcaaaggaacttattaagttttaaagacatctgcagaaatg gatatcatattgagactataagcgaaggtagtatcgaataccttcgaatcacaagtaatatccaagaatc tcaaaatattcaggaaaaactacctgctttctccactggtttatattatactacaattaatacaattgaa gtaaatgctacagtaaaccagaactctacagaaaacattaaagtttggcatgaccggtaggccatcccag tacaataatgatgcgaaagataatcacgaattcatgtggacattcatgaaagaaccaatagattcgtcct aatgatttttcatgtgttggttgttcacaaggcaagttgattatacggccttcaccagctaagataaatt tcgaatcaatcaattttttggaatgaatacaaggagatatttgtgggccgattaacccatcatgtggaac tttataatcctttatggttttaattgactcatctagaagatggtcgcatgtatccctattatcaactcga aacctggcgtttgcaagattgcttgctcagttgattagaatacgagcatattttccagactttcctttaa caaaaatgtgtcttgataatgttggtgaattcacatctcaagcttttaatgactattgtatgtctattag gataagtgttgaacatcctgtagcacatgttcacacacaaaatggtttatcagaatcactaatcaagtgt cttcaattgattgctagaccattacaaatgaaatcaaaactcccaatatctgcttggggacatgctatat tacatgtagcatcattgattcgcatcaggccaacaagtaatcataagttctctccatctcaactggttct cggtgaggaaccaaatatttctcatctcaaagtttttggattgtgctctatatgttccaattgctccacc acagccatataagatgggacctcaaagaacgttgggagtatatgttggttatgattccccatcaataatt aagtatctcaatctatctataggagatttattcaaagctcgattcgtagactgtcattttaatgagtctg ttttcctaacattagggggagaaaataaatagtcgggaaaagatatagtttggaatgaattatcaatgtc ttatctttatcctcggactaaagagtgtgaattagaagtccaaaagataattcatttacagagtttagca aatcagctgccagatgcattcattgacccaaaaagtgtgatcaaatcacatataccggctgcaaatgctc caataagaataaatatcctagaaggacaaaatcaaactgtaaatgagtctaagacatgtttaaagcgtgg tagacctattggttccaaagataaaaatcctcgaaaaagaaaaggggcaaaaattggcataggtaaaaca gaggatataattacaaatgaagaatctccagaagagagcttagacatgacacataaagaaattcaggtac ctgacaatgaagagatctcaattacttatgtcatgtctggaataaaatggaaccaaaagcaaatcgatat ccatgatatttttgcatgcaatgtagcagttgatgttatggatgaggatcatgaaccaacatctattgaa gagtgtacacaaataagtgattggccaaaatggaatgaagcaatagatgctgaattaaaatttcttgcaa agagagaagtgtttagaccagtagtccgtacatccaaaggtgtaaaaccagttggacataaatgagtttt tgtactaaagaagaatgcaaatggtgaaattgtgaggcgtttagtcgcacaaggattctcacaaagacca tgaattgactatgaagagacatggtgacttgatttacgtttgatggatgttgtcacaacctatttatacg gtctactagaaaatgacatttatatgaaagtccgagaaggattaaaaatgcctcaagcagtaaattcaaa ttctcgagaacaatactgcataaaattaaattgatccctttatggattaaaagaatcagggcgtatgtgg tataatcgccttagtgagaacttgctaaaagaaggctacaaaaatgaccctgttagtccatgcatcttta taaaaattttgggaaaggatttgttataattgcagtttatgttgataatttaaatattatgggaactatt gcagagatctcattcactgtagaatatttaaagaaagaattcgagatgaaagatcttggaaaaacgaaat tttgtttaggactacaaatcgaacacctaaagaacgtaattctggagtatcaagagacatataccaaaaa tgttctcaaaagattctatatggatggagcataccccttgagtagtccaatggttgtaagataacttgat gtggataaacatccattccgtccttgggaaaacaatgaagaagttcttagtcctgaaggaccatacttaa gtgcaatatgagcactgatgtatcttgctagtcatataagaccttatatatcatttgcggtgaatttatt agcaaggttcagctcatgtccaacttgaaggcattggaatggaattatacatatactttgttacctccaa ggtacgaaagacatgggtctgtattttcctaacaaatccaagtagcgagtgcgagtgtgtatggctaaga tccatagttcaccatatacaagaagattgtggtttgtatgcagggaaaaaggctccaacaattatgtacg aagacaaatgcagcatgcatcccacaactcaaagacggatacattaaaggtgatagaacaaatgcagcat gcatcccacattcttcttcacacacgatctacagaagagcggcgatgtatgagttctaccgatccgttcg aacgataatctggctgacctattcaccaaggctctacctactgctactttcaagaatttcgtctatcgta tcggattacgccgtctcaaagatctcgacgtatatactcataagggggagtaatggcgtgttgcactctt tttcccttaatcatggttttcccaatgggatttcttggtaaggtttttaatgagatatcatttcagatgc actacgagctatggtactataatggtcatcaagggggag1