;ID ATCOPIA28_I DNA ; ATH ; 4706 BP ;XX ;DE Internal region of the ATCOPIA28 LTR retrotransposon. ;XX ;AC AC007178 ;XX ;DT 16-DEC-1999 (Rel. 4.0, Created) ;DT 16-DEC-1999 (Rel. 4.0, Last updated, Version 2) ;XX ;KW LTR retrotransposon; COPIA superfamily; copia-like polyprotein; ;KW ATCOPIA28_LTR; ATCOPIA28_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4706) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (December 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA28_I is an internal portion of ATCOPIA28, a copia-like ;CC LTR retrotransposon recently integrated in the genome; it is ;CC flanked by a 5-bp target site duplication. Its long terminal ;CC repeats, deposited in Repbase Update as ATCOPIA28_LTR, are 98% ;CC identical to each other. ;XX ;DR Positions 10521 15226 Accession No AC007178 GenBank (rel. 112.0) ;XX ;SQ Sequence 4706 BP; 1594 A; 775 C; 879 G; 1458 T; 0 other; ATCOPIA28_I cgttatcagcacgagctgcctaagctaatagatactaaaaaaaaatttctgataaaaaaccatatttatt atcgactcatgattcataatatcaatctcatatcatttttcgatttaaaaccatgatggcttgaatccga ttcatacgttaatcggttgatgatggcttgagtttcttctttattatttctatgccgccgtgtgcttcgt caataatttaatacacccatacgtttgccgttcaaatcagtttttgataaatcgtatattatttattatt attttcatcacgtcctgattttgataaattgtacaccacatgtttaatcgttatatatcatggtcgtcat ctcgtttatcttgttgttatgataagtaaatatttttcatttttattaaatatgctatcttaaagaaaag tcaaacatgaatatacggttcatttcatttgccatcacatgtctaatattatatgaaaattaatttaata atctgatcaagttacacgatcgatgatgacttatgctcatttgataaatttattgcttcatattttttta tattattttattgactggtttagttggtacaattgtttgatttggtttgataaattgaaatcacaatctg ttatttattgataatataaatatgacatcgttattcatttatttttatatacaattattgtaaaaatata tatatatatatatatatatatatatatattaattgtatcatttatgaaatttaattaaatttcttaatat ttcagtgaatcatgtcaaaactcatgagccttgaatttggagctcttgatatcacaggagataactgctt ggcatgggcactagatgctgaaattcatctagattcaaaggatctccttgatactattaaagatggtaat caaactccaagcagagaaaaatcaaaagctatgatttttctgcgacaccatttccatgaggatctcaaga atgagtacctcagtgtgaaagatccacatatcctttggaacgatctaaaggataggtatgatcatcaaaa gacagtgatcttacctaaggcccgatatgattggactcatctgagactccaggactataagtctgtaagt gagtacaactcagccttgttcaaaataacatccaaattggagttatgtggagagaaaatcacggatgcat ataagttggagaaaacattctctacttttcatgctaataacattgtcctgcaaacacaataccgtgaaaa gggattcgtgaagtattcccaacttatttcttgtctccttgtagctgaaaaaaaataatgagttgctttt gaaaaatcatggactacgcccatcaggttctgctccattccctgaagcgaatgtgacatcctatggtcaa gaaagtggttacaaccgtggccgtggccgtggttatggtcgtgatcgtggtcgcggtcgtggtcgtgggc gtggatacactggaggacgaggcagtggagttcactttaaaaactcaaactctcacaagaagtgggaaaa caaagatggtaacaaacaagtgaaaacaccatatgcgaatatctgttaccgttgtggagcgaaagatcac tggtctcgtacgtgacgtacaccaaagcatcttgttgagctctatcaacaatcagtcaaaggcaagggga aggatgttgaaacaaatttggtgtatgaagacggagttgatgattttgactttgatgatttcactcactt ggacattgacgattttcttcctgaaaaagagacaaagtgatcaaactacaactatttgaagaactatgtt ttatttctttatttattttttttttgctttcaattatttgatttttatttatttggctttcagttatttt attttacgaattattattaaagttgatttattttaattattggattcattatcttatttatgatattaat ttattttatttatttgaagaaacaatgaatggtggtgatatttgcttggcagacagtgcaactagtcata ctattttaaaaaataagagatatttctcttctttgacaatgaaagaagcaagtgtaactaccgtaacagg tagtgcaaagataattgaaggctctggaagagcaaatatttcaatgcctatgggaacacaattagaaatt gtggatgctttatactctcctaaatctcaaaggaacttattaagttttaaagacatccgcagaaatggat atcatattgagactatgagcgaaggtaatatcgaataccttcaaatcacaagtaatatccaaagctctaa aaatattctcgaaaaactacctgctttctccactggtttatattatactacaattaatacaattgaagta aatgctacagtaaaccagaagtctacagaaaacattaaagtttggcatgaccggttaggccatcctggta caataatgatgcgaaagataatcactaattcatgtggacattcattaaagaaccagcagattcgtcctaa tgatttctcatgtgttgcttgttcacaaggcaagttaattatacggccttcaccaaaaagtgtgatcaaa tcacatataccggctgcgaatgctccaataagaataaatatcccagaaggataaaatcaaactgcaaatg agtctaaggcacgtttaaagcgtggtagacctattggttccaaagataaaaatcctcgaaaaagaaaagg ggcagaaattggcatagataaaacagaggaaataattacaaatgaagaatctccagaagagaccttagac atgacacagaaagaaattcaggtacctgacaatgaagagatctcaattagttatgtcatgtctggattaa aatggaaccgaaagcaaatcgacgtcgatgatatttttgcatgcaatgtagcagttgatgttatggatga ggatcatgaaccaacatctattgaagagtgtacacaaagaagtgattggccaaaatggaatgaagcaata gatgcagaattaaaatctctggcaaagagagaagtgtttggatcagtagtccgtatacccaaaggtgtaa aaccagtaggacataaatgggtctttgtacgaaagaagaatgcaaatggtgaaattgtgaggcataaagc acgtttagtcgcacaaggattctcacaaagaccaggaattgactatgaagatacatactctcctgtggtg gatgcaactacattcagattccttattagtctggcagtaaaagaagggcttgatttacgtttgatggatg tagtaacagcctatttatacggtccactggaaaatgacatttatatgaaagtcccagaaggatttaaaat gcctgaagcagtaaaaacaaattctcgagaacaatactgcataaaattaaatcgatcactttatggatta aaacaatcagggcgtatgtggtataatcgtcttagtgagtacttgataaaagaaggctataaaaatgacc ctattagtccatgcatctttataaaaagatttgagaaaggatttgttataatgcagtttatgttgatgat ttaaatattatgggaactcctgcagagatttccttcacagtagaatatttaaagaaagaattcgagatga aagatcttggaaaaacaaaattttgtttgggactacaaatcgaacacctaaagaatggaattctggtgca tcaagagacatatacagaaatgttctcaaaagattctatatggatggagcacaccccttgagtagcccaa tggttgtaagatcacttgatgtggataaagatccattccgccctcgggaaagcaatgaagaagttcttag tcctgaagtaccatacttaagtgcaataggagcactgatgtatcttgctagtcatacaagacccgatata tcatttgcggtgaatttattagcaaggtttagctcatgtccaactcgaagacattggaatggaattaaac atatacttcgttacctccaaggtacgaaagacatgggtctgttttttcctaaccaatccaaggaagattt aattggttttgcagatgcaggatacttatctgatccccataatggtagatcgcaaacaggatatgtcttc acatgcgggggtacagctatttcttggcgctctatgaagcaaactattgcagccacatcttccaatcatg cagagattttagcaattcatgaagctagccgcgagtgtgtatggctaagatccgtagttcaccatataca agaagattgtggtatgtatgcagggaaaaagactccaacaattatgtatgaagacaatgcagcatgcatc gcacaactcaaagacggatacatcaaaggcgatagaacaaagcacatcctaccaaaattcttctacacac acgatctacaaaagagcggcgatgtacgagttctacagatccgttcgaatgataatctggctgacttatt caccaaggcgctacctattgctactttcaagaagttagtctatcgtatcggattacgccgtctcaaagat ctcgacgaatatactcataagggcgagtaattgtatgttgcactctttttcccttaaccatggtttttcc cattgggttttcctggtaaagtttttaatgaggcaacatttcaaatactttacgagttatgatactataa tggtcatcagggggag1