;ID ATCOPIA27_I DNA ; ATH ; 5658 BP ;XX ;DE Internal region of the ATCOPIA27 LTR retrotransposon. ;XX ;AC AC006601 ;XX ;DT 30-NOV-1999 (Rel. 4.0, Created) ;DT 30-NOV-1999 (Rel. 4.0, Last updated, Version 1) ;XX ;KW LTR retrotransposon; COPIA superfamily; copia-like polyprotein; ;KW ATCOPIA27_LTR; ATCOPIA27_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 5658) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (November 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA27_I is an internal portion of ATCOPIA27, a recently active ;CC copia-like LTR retrotransposon; it is flanked by 5-bp duplications ;CC of a target site. Its long terminal repeats, deposited in Repbase ;CC Update as ATCOPIA27_LTR, are 98% identical to each other. ;CC ATCOPIA27_I encodes 1552-aa copia-like polyprotein (position 844- ;CC 5499). ;XX ;DR Positions 86124 91781 Accession No AC006601 GenBank (rel. 112.0) ;XX ;SQ Sequence 5658 BP; 1777 A; 1173 C; 1328 G; 1380 T; 0 other; ATCOPIA27_I cgttatcagcacgagcttgctcttaacaaaaccctagcagccgtcgctcaaccctagctcgtccgccgtc cgccgtccgctgttccgtcgaccgcctgtcgaccgtttgctgaccgtctgtcaaccgacgatacttccgt cgaccgccgactgtcaaccagcgaccaccgtttgataaccaaggtctttagctcccggttccagtccgta caaccccaaaggagaaaggtaattcattaaaccctaaaactaaagaaccctaatcgaacatggatctaac aaacggctcccggttgattagtgtttgcaatatgattgcttgtttgctcgattgtttgtcttgttattgc ttatcctaaacttgcaaatcgaaaacatcttaacctagaatccgaaaccctaaaagacataaaccctaaa tcaaaaacactataatcggatcaaaaccctaattctatttcgtgattgtttgaagttatctagggtgttt agtttgattgatttcatggttgcatgcatgaattgttaaaatccctcatgttgcataaaccctaaaacca aaaccctaaggaaaatagaaaatcgctaaaaaggaaaatttaccctaagaccgaaaaaggaaactctccc aaaaggaaaaagaaaaaataatccctagagaaaagaggaaattctcctaaagagaaaagggaaattatcc tagagaaaagaggaaattgtcccaagggaaagaggaaaagagaaagtcaaatccttgagtaaatagaaaa atcgatttatggtcttcatgacatttacgatttgtccattacatgatattgactcgtaacttcttcattg tagatgtcgaagctcacaaacctcatgtacgctgcactcttggcatctggtgacaattaccttcaatggg cattggacaccaagattgagctgaagtctaaaggactcgccgagtgcattgtggaaggcaatgagaaaac ggagaggtcaaagtatcaggcgatttcaatcatacgccatcacatagcagagagtttgaaaaatcagtac cttacggtcgaggatccacttgagctttggcttgagttgaagaatcgatacgaccaccaaaggaccatac aactacccaaagcccaacatgattggcttaacctcaggatccaggattacaaatccgtggaggagtataa ctccgagctctttaagattgtctctatcctgaggctgtgtggtgagaaggtgactgagaatgacatgctc gagaaaactttctcgacctttcacgcgaacaacgtactgcttcagcaacagtaccgtgcgaaagggttta cgacttacacaagtctagcctcctgcttgcttcttgctgagaagaacaatgagctgttactcatgaacag cgcattgagacctcccggatccacagctgtgcccgaagccaatagagccgaaatggccaaagcgcctaat gaacctcaggcgaccaaggaatccaactacgtccataggggtaaccctcacggccgtggccgtggcagag gacgtggtggaagaggtcgtggcaatttctacggccaaggaaaccactatggtggtagaggccgtgggaa ctatggccgaggtagaggtagaggccgcggtgttaacaaaccgcgaggaaaggctaagtccgtgtgctat aggtgtggcatggacgaccattgggcaaagacgtgcagaacctctaagcacctcattgaggcatatcaag agatgataaagcaaaagggacccgaagccaatttggttcatctcgatggtgaaggggatttcgaccacga gaacgatgacctaatggattatgagacttcggacatcttgggaaaatatacatctagttttaaatttgct ttgtttgctttgctttgtagtttgatctctattgcgcgatgtcttggatttatttattttaatggaattg ctttgcttcattattgtttgctttatcgcctaagatatagttcttgtccacatttagaaatggccgagga caaggacatactcatagtggacagtggctcaagccacacgatattgagagacaaaagatatttcataaat ctaacattgagaaatgccaacattagcactatagcgggtatagcgagtctcattgagggctacggccaag cccatgtactcttaccaaacggcacacatcttgaaataagtgatgccttgtattcacccagctcaaagag gagcttgttaagtttcaaagacatacgtcttaatggtttccacgttgaaacaaagggtgaagggaataga gaattcctacatgtaacagagatcgcccaaggacataagagagtcctagaaactatacccgcattgtcca ctggtctttatcatactaagatcaacatgatcgaagctaatttggcaatgaacaaagagttcatagagga gttcactttgtggcatgaccggcttggccatccgggtcataacatgatgcgaaagctaatgataagttca aaggggcacaccctaaaagaaaagagagttatcccaaagaagctcacgtgtgctgcatgtgcacaaggga aactcataataaggccattaccggcaaaggtcaataaagagaccataaactttctagaaaggatacaagg ggacatatgtggaccaatacacccaccatgtgggacgtttcgatacttcatggtcctcattgacgcatcg acaagatggtcacatgtttgtctgttgtcctctaggaaccaagcatttgctaggttactgacccagatca ttcgtctgagagcccattttccagattttccgcttaagactatacgtctagataatgccggtgaattcac gtcccaagcgtttaatggctactgtatgtccatgggggtaagtgtggaacatcccgtggcacatgtacat acacagaacggattagcggaatccttcattaaacgaatccaattgatagctcgaccattactgatgaggt cgaggctcccagtagccgcttggggacatgctgtattacatgcatcggaacttattcgtatcaggccatc tagtgaacacaaatattcaccatcccaattgttaacgggtcatgagccagacatatcccatctaaggata ttcgggtgtgccgtatatgtaccaattgctccaccacagagaacaaagatgggacctcagaggaggatgg gaatatatgttggatttgattctcccaccattataaagtatctagagccaacaacgggtgatctatttaa ggctagatacgcggattgtcacttcagtgaatccgagtttcctgcgttaggtggtgagacgaacaagctg ggtaaagaaataaaagagatagcatggaatcaaacatccttgaattggcaagatcctcggactctgatgt gcgattcagaggtccataaaattatacatttgcaaaagctagctaatgagttgccagattcctttgctga cccaaagagagttgtgaaatcgtacataccagcttgtaatgcaccagtacgtattgatatccagaaggga atcaatgtaattgctaccaagtctaacccacagaagaaacgaggtagaccagtaggttccaaagataaaa atcctcgaaagactaagaaaggtgcaatgggaaccgaggtaaaggaaaccatagacatggccgcggcaag tcctaaggaaccaccaaatgagatttgggacgccgaagctcatggtcctgaaggaattgataatgatgag atctcaataaactacatcatgtctggaataaaatggaaccgaaaagaagtcgacgtcgacgagaaatttg catatgaggtagcatatgagataaatgaggatcatgaacccacgtctatcatagagtgcactcaaaggtc agattggctaaagtggaaagaagccattgacgtggagttaggttcattaaagagaagagatgtgtttggt ccaatattgaggacaccatctaatataaagccagtaggacacaagtgggtctttgtgaggaagagaaatg agaaaaacgaaatcgtgaggcataaggcacggcttgtggcacaaggattctcacaaagaccgggagtaga ttatgaagagacatactcccctgtggtggatgcaacgacttttagatatctaataagtctggcaataaga gagaaccttgacttacggttaatggatgttgtaaccgcatatctatatggtccactggataatgagatat atatgagattaccagagggtattgagctcaaaggaaaagataagaatgggtctcgagaccaatactgcat aaggctgaacagatcgctttatgggctgaaacaaagtgggcgcatgtggtacaataggttaagtgagtac ttagtcaaagagggctataaaaatgaccccatcagtccatgtatcttcatcaagaagtttgctagcaaag gatttgtgataatagcagtatatgtggatgatttgaacatcctgggaacctctggggaaatcgcccaaac agtcgaatatctaaagaaagaattcgaaatgaaagacctaggcaagacaaagttctgtttgggattgcag cttgagtacgtagataaaggaatccttgtgcatcaaagggcatatacagaaacagtactcaagagattta atatggacaaggcccacccattgaccagcccaatgcaggtgaggagcctaggattggatagtgatccatt cggtccaaagaaggatgatgaagaaattctcggtcctgaagtgtcatatctcagtgccataggagcgttg atgtacctgtctagccacactagaccggacatatgttttgccgtgaacctcctctctagattcagttctt gtccgaccaagaggcactgggaaggaatcaagcatttgcttcgatacctacaagggacaattgattttgg tttatattatactaaccataacaaagaaggtttagttggttttgctgatgcaggatatctttcagatccg cacaatggaaagtcacaaacgggttatgtgtttactcatggtggaaccgcaatatcctggagatcaatga agcagaccatcgcggccacttcctctaaccaggcggagatattggcgatgcacgaggccagccgcgagtg tgtgtggttgaggtcaatgactcaacacatacgagccgattgtggaatggtcgaagccaaggagccgact atcatatacgaggacaacgcggcatgcattgctcagctcaaggaaggatacatcaagggagatcggacga agcacattctgcccaagttcttctacacgcatgacctacagaaggatggtgaagttaaggtggtacaagt acgttcaagcgacaattcagccgatctattcaccaaggcattaccagcaacgacattgaggaagctcgcg catcagattgggatgcggaggcttaaggacttacagggatgaccaattcagggggagtaatgcgtgctgt actctttttcctcactatggttttgtcccgaaagggttttcctagtaaggttttaatgaggcagcatccc cctagcgcattactgagatctcgtaggcatctacacggttatgtcatccaagggggag1