;ID ATCOPIA26I DNA ; ATH ; 4605 BP ;XX ;DE Internal region of ATCOPIA26 LTR-retrotransposon. ;XX ;AC AF072897 ;XX ;DT 18-NOV-1999 (Rel. 4.0, Created) ;DT 18-NOV-1999 (Rel. 4.0, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; copia-like polyprotein; ;KW ATCOPIA26LTR; ATCOPIA26I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4605) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (November 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA26 is a recently active copia-like LTR retrotransposon, ;CC it has 5 bp-long target-site duplication, and its LTRs, ;CC ATCOPIA26LTR, are 99% identical. Its internal region, ATCOPIA26I, ;CC encodes 1489-aa copia-like polyprotein (position 138-4595). ;XX ;DR Positions 55458 50854 Accession No AF072897 GenBank (rel. 112.0) ;XX ;SQ Sequence 4605 BP; 1188 A; 1062 C; 913 G; 1442 T; 0 other; ATCOPIA26I tggtatcagagcacaatacctaactactaaaaggtttttgtgatcgattctgtgatctctccttccgcta taagagatcgctttcttattccttctaacttctctacttaatacttgcatcaaactctccgttcatcatg agtactgaattggctctcgctagctccaccacaccagctaggactgaaacaaggcgtacaatctcgccat atgatctcacatccggtgataatcccggaactctcatctccaaaccgttgcttcgtggacccaactacga cgaatgggccacaaatcttcgtttggcgttaaaagctagaaagaaatttgggtttgctgatggatctatt ccacaaccagttgagacagatcccgatttcgaagattggactgccaacaatgctcttgtggtttcatgga tgaagctcaccatcgatgaaactgtttccacatctatgtctcatctcgacgattctcatgagctctggac acacattcagaaacgctttggtgtcaagaatggacaacatgttcagcgactcaaaacagagttagcaacc tgtcgtcaaaaaggagtggccattgaaacttactacggctgtctctctcaactgtggtgtagcttggcgg attaccaacaagctaaaaccatggacgacgtcagaaaagaacgtgaagaagacaaattgcatcagtttct tatgggacttgatgaatctgtgtacggagctgtcaagtcggctcttctctctcgagtgccactaccttct ctcgaggaagcttacaatgctttgacacaagacgaagaatccaaatccttgagtcgcttacataacgaga gggttgacggtgttagcttcgcggtccaaactacttcacgacctcgagattcttcagaaaacagagtctg tagtaattgtggccgtgttggtcatctcgccgaacaatgtttcaaattaatcgggtatcctccttggctc gaagaaaaattgcgtcttaaaaacactgcatcttcttcacgtggtggtttaagttcgttcaaaggaaaac agagtcatggtcgtggatcttctattaatcatgtcgcttcttctggaatggctgccaatgttgttacgaa ttcatcgctcacttctccattgacatcagatgatcgcataggacttagtgggctgaatgattcacaatgg aaaattttacaaacgattcttgaggaacggaaatctaccttaaatgatcatcagtctggtaagtattttc ttgaatcttggataattgattctggagccacaaatcatatgactggttctcttgcatttctccgtaatgt ttgtgatatgcctcctgttttgattaaacttcctgatggacgttttacaaccgctacaaaacaaggcagt gttcagttaggctcttctttagatcttcaagatgttctgtttgttgatggtcttcactgccatctcatct ccgtttcacaactgactagaacacgtcgctgcatttttcagatcactgacaaagtttgcattgtccagga ccgcaccactctgatgctgattggagcaggtagagagctgaatggcttatattttttccgaggagtggaa acagcagctgcggtgactagtaaggctttgccgtcttcacagttatggcaccaacgtttaggacatccat cctcgaaggctttgcatttgttacctttttctgatgttactagtagtacttttgattcaaagacttgcga aatctgtattcaagctaaacacactagagatccttttcctttgagcagtaataagacgagttttgctttt gaattagtgcattgtgatctctggggtctgtatagaaccacttcaatatgcggctctcgttattttctta ctctagttgatgattattctcgagcagtatggttatacctcttaccatcgaaacaagaagctccaaagca tctcaaaaacttcatcgctctagtagaacgacaatacactaccaacatcaagattatccgaagtgataat ggttctgagtttatttgtctctcggatttctttgcacaaaaaggaatcatacatgaaacttcttgtgtag gtactcctcaacaaaatggtcgcgttgaacgcaaacaccgccatatccttaatgttgctcgtgctctccg atttcagtctggtttacctattgagttttggagttattgtgctcttactgcagcatatctcattaacaga actccaactccattacttaagggaaagacaccatttgagctcatatataatcgtcctccaccactgcagc atattcgcatttttggatgtatttgttatgttcataatctgaagcatggaggagataaatttgccagtcg tagccataaatccatttttcttggttatccatttgcaaagaaaggatggagggtctataatatagaaact ggtgtggtttcagtttcacgtgatgtagttttccgtgaaacagagtttcatttccctatctctgttatgg attcgtcaccatcacttgatccggttctcgttgattcatctgaattagaagaaatctctatgactcctcc ggtcactccgtcttctccggctactccatcttctccggtcactccgtcttctccggttactccgtcttct ccggttagtccgtcttctccggttactccgtcttctccggtcactcctctatcttcaactacaacctcag ctgcgatagacaccattgaggatattaccactgatcttgaggattcaacctctatggatttttttcctga tgatgaagatgagttttctcccactgctacagaatctcctgcttcatcgtcatctcctgtacaccctcca gcagttcaactagagcttctcggtaaaggtcatcgtccaaagagacctcctgttaaacttgctgactacg tcacgactcttcttcatcaaccattcccttccgcgactccgtatcctttggacaactacatctctagttc acgtttctcagataattatcaagcatatattctcgctattacatctggaaatgagcctcgaaactataac gaagctatgcttgatgatcattggaagggtgcggtttcagatgaaattggttcgcttgaaaatcttggta cttggacagtcgaagacttgcctccagggaagaaagctcttggttgtaaatgggtgtttcgtctaaaata caaatctgacggcacacttgaacgacacaaagcacgtttggttgttcttggtaacaatcaaaccgaaggt cttgattacacagaaacttttgctccggttgcgaaaatggtcacagtccgcgcttttcttcagcaagttg tttcacttgactgggaggttcatcaaatggatgttcacaacgcgtttctccatggtgatcttgacgaaga ggtatacatgcaatttcctccgagatttcgtactggtgacaagacaaaagtatgtcgtttacgcaaatct ttgtatggtctcaaacaagctcctcgttgttggttcgcaaagctcacatcggcattgaagaactacggtt ttattcaagatatttcagattactctttgtttatctttcacaaaaacggagttcgacttcatgttttagt atacgtggacgatttgatcatcacgggtactactattgctgtgattacagagtttaaacattacttaagc tcttgtttctatatgaaggatcttggaattttgcggtacttcttgggaattgaggttgctcggagtcctg aaggtatctacttatgccaacgaaagtacgcacttgacattatcacagaaacgggtctccttggtgttaa accggcttcttttccattggaacaaaatcataagcttgcttttgccactggtgaaacaatagacgaccca cttcgataccgtcgtctagttgggcgcattatttatcttgcgactacgaggcctgaattatcatatgtta ttcatattctctcacagttcatgcataatcctaaaccggctcattgggaagctgctcttcgcgtcgtcag atatctaaagtctagtcctggtcaaggtattctcctacgtgctaatacacctttggttctctctgcctgg tgcgattcagactttggagcatgtcctcattcagatcgatctctcaccggttggtttattcagttgggtg gctctcctttatcttggaagacacagaaacaaaatgttatttcccgctcttctgccaaagctgaatacag ggctatggcagaaacagtgagtgaaatcatatggatccgtgaattacttcccgctctcggtattccgtgt actgctcctaccacactccattcagatagtttatcagccataagtcttgctgctaatcctgtctatcatg ctcgcactaaacatgtgcgtcgagacgtccatttcattcgcgatgagctcgtcaatggcactatcgctac taagcacgtctcaaccacttctcagctagcggacattctcactaaagccttaggacgaaaagagtttgca gactttcttgccaagcttggtatctgcaatctccatataccagcttgaggagggg1