;ID ATCOPIA24I DNA ; ATH ; 4707 BP ;XX ;DE Internal region of ATCOPIA24 copia-like LTR-retrotransposon. ;XX ;AC AB015477 ;XX ;DT 03-MAY-1999 (Rel. 3.3, Created) ;DT 03-MAY-1999 (Rel. 3.3, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW ATCOPIA24LTR; ATCOPIA24I. ;XX ;OS thale cress ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4707) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (April 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA24I is an internal region of a recently active ATCOPIA24 ;CC copia-like retroelement flanked by 94% identical ATCOPIA24LTR ;CC LTRs and 5 bp-long target-site duplication. ORF encoding copia- ;CC like polyproteins contains several false stop-codons and ;CC frameshifts. ;XX ;DR Positions 79749 75043 Accession No AB015477 GenBank (rel. 109.0) ;XX ;SQ Sequence 4707 BP; 1360 A; 894 C; 835 G; 1618 T; 0 other; ATCOPIA24I tggtatcagagcacaataacattccgcgatcattgtgttcatcggaagagagctttgttctttgtgttac gttttcttcttcgattctttgaagtttctgattccgattatccggaattttccgttctgtttcatttttt ctttcattttgaccttaacgttgacgattctcgttttcgattcatcaaattcgtcacgttttctttgtaa tttctcattcttacactgagaatgggatcttatgtacctcaatctactattcgggtgactcgtcctccga tcaacaacaatggtgatcaatttcgttatccagctgatcaatatgagaatccttactatcttcatagtgc ggatcacgctggactcattcttgtatcagatcgactaacgactgcttctgattttcattctggcatcgat cgatcttgatggctttaaatgttagaaacaagttgggattcataaacggtacgatttctaaaccaccaaa agatcatagagactttggtgcttggtctagatgcaatgacattgttagtacttggttaatgaatttggtt gataagaagataggtgagagtttgctttttataaaagatgaaagacagaattctgtgaaaccatctactc ggattgataatgtgtcttttcagagtgttgctcccatgatgaatgatgtagagaatgcatatattgcaac ttataatactgtcaaagcaagtgagaaaccgatttgttctcactgtgggaaagtaggacatacggttcag aaatgttacaaggttcatggttatccaccagacatgaaaataggcaatcaaggatatacttacaaggtta atccacagttacaagttcaacctaggatacagatgatgccgagtcagccaaggatgcaatttcctaatca gatgcaaatgaagccatatgctaactcaatgcagaaagctaatgatgtggctcatgtttacaccgagaat tgtgcttatctgtctgaaggctactcttttaatcttatgatggttccttatggttcatatggttctaata ttcaacagatgcctcatgtcacacaaggtggaaacaatttaagtctacaagattttactccacaacagat agaacaaatgatttcacaatttcaagctcaagttcaagttcaagagcctgaagcttcttcgggtaatcct agtccaacatctacagtctcagaacatggtcttatggctcttacttctacttctggtactataattccct ttccttctactagccttaaatatgagaataataatctcacttttcaaaatcatatactttcaactcttga aacatttctatcgcataattctcggattatagatagtggagcttctagtcacgtttgttcagacttagta atgtttagggaattaaagcctgtttctggagttactattactgttaccaaatggtactagggtctctatc actcatacaagcactgtgcatataactcataagttgattttgcataatgttttgcatgttcctgatttta aattcaatttgattaaaactttggcatgttcagctcatttctatgtttcttgttgtttaattcaggaact ttctcagggcttgatgattgggaggggtaaactatatcacaatctttacattctcgagacaggaaataaa tccctctctacatcaatacctgaagcttgttcttttactggatctgttcttgatgatggcaatttgtggc accagggtttaggtcatccatcatcgcctatcttacaaaaacttgttagtcatattccttctttaaagtc atttcattgtgatgtttcttcttgtaaaatctgtcatttagctaaacagaaaaggctagcttatgtgtct catgataatctagctgaaaaactatttgatcttgtttatttagatatatggggtccttttagtattgaat caattgaaggttttagatattttcttaccttagttgatgattgtacttgtttagttgatggactacttgg atatacatgttgagaaataaaagtgatgtgtctagtgttttcctgcatttctgaaacttgtttctacaca atttaatacaaaagttaaagcaattctttctgagaacgcgcctgaattagcattcactgaattgattaaa gaacaaggcatgattcattacttttcatgtgcttatactcctcaacagaattctgttgttgagagaaagc atcagcatttgcttaatgtagctagggcattactctttcaatctaaagttcctatgcaatactggagtga ttgtgtaatcactgcaactttcttgataaatcgtttgtcttcaccattgcttaacaacatatcaccttat gaacttctacttaaaaggaaacctgattacagtttattaaagaattttggttgtctctgttatgtttcta cgaatttacatgaaagaaataagttttcttctcgtcctaaaccctttattttcttaggatatccttctgg atataaaggttataaggttttaggcttggaatctcacactatttctgtttctcgtaatgtgatctttaaa gagactgattttccttttaaaattagtgaacttctttctaaagttgttgatgtgtttttgaatactatct tgcctttacctgctccattagattttgttgactcattgccattaatagatgaagatacattgattcctac tgcaccatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatctgca tcatcatcatcatcatctatattagtccctagtacggttaatcataataaagaagcattaggaacagacc ttaatactgtacccattactaggtctaaacgaactactagagctcctggttatctttctgaatatcattg ctcattagttccttttacttctaatctaccacctacaaatactattccctctgagactttattatctgtt acacttcgtgaagcaccatcacctaaaaagactacaccatatcccatttcatccgtcgtctcttatgata cgtatacacctctttttcaatcctatatctttgcttctaatgctgagatagagccaaagacgttttcacc ggctatgaaatccgaaaaatggactaaggctgctaatgaagagcttcatgctcttgaacagaacaagaat tggatggttgaatcattacctgaagggaagaatgttgttggctataaatgggtgtttaccattaaataca accctgatggaacaattgaacgctacaaagcaagattggtagcacaaggattcactcaacaggaaagtat tgattacttggacactttctcacttgttgctaaattgactagtgtaaagatgatacttggtcttgctgct gcaacgggatggactctaacacaaatggatgtgtccaatgcattcttgcatggagagcttattgagatct tcaagagtattcctcaaggatacaccccacctgcaggtgtatctcttccccctaatccggtatgtcgatt actgaaatccttatatggccttaaacaagcttcacgtcaatggtataaaagattgtcatcagttcttctt ggtgcaaacttcatccaaattcctgctgacaacactttattcatcaagtttacttctgcatcttttgtgg cagctttggtttatgttgatgatatcatgattgcaagtaatgatgataaggctgtggaagaacttaaagc tttgttaaggtctgagtttaagattaaggatcttggtcctgctagatttttccttggattagaaatttca agattttcacaagggacttcagtctgtcagaggaaatatgctcagaacttgttggaggatgcaagattac ttggatgcaaaccaagtttgatacctatggatccgaatctgcatttggttaaagatatggaactctatta ccaaatccaactacttatagggaactcattggtcgactgctttatctcactattacaagaccagatataa catttgcggttcatcaactgagtcagttcatttcagctcctactgatattcatcttcaagcagctcataa ggttctccgatatatcaagacgaatccaggtcaaggattgatgttctctgcaaatgttgaattgtgtttg aatgcattctctgatgcagattgggaagcttgcaaagatactagacgttcagtatcaggcttctgtgttt atttaggtacttcactcatctcttggaagtctaagaaacaggcagttgctagtcgaagtagtgctgagtc tgagtacatggctatggcacaagctacttgtgaagtgatttggctacagtagttgctcaaggatctgtat attcaagttacttgtcctgcaaaattattttgtgacaataagtctgctctacacatctcgatgaatccgg tcttccacgagagaactaagcacattgagatcgattgtcacacggtaagggatcaaattaaagctggaaa tctcaaagccttacatgttccgactgagaatcagcatgctgacattcttacaaagtctttacatccaggt cctttccaccatcttctgaagcaaatgtcgttgtcaaatctctaccttccaaacgagacatttaaaagat agagatttgagggggta1