;ID ATCOPIA23_I DNA ; ATH ; 4093 BP ;XX ;DE Internal region of ATCOPIA23 copia-like LTR-retrotransposon. ;XX ;AC AB019224 ;XX ;DT 03-MAY-1999 (Rel. 3.3, Created) ;DT 16-DEC-1999 (Rel. 4.0, Last updated, Version 2) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW ATSASHA5LTR; ATSASHA5I; ATCOPIA23_LTR; ATCOPIA23_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4093) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (April 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA23_I is an internal region of a recently active ATCOPIA23 ;CC copia-like retroelement flanked by 1% divergent ATCOPIA23_LTR ;CC LTRs and 5 bp-long target-site duplication. ;CC An ORF (position 39-4061) encoding 1340 aa-long copia-like ;CC polyprotein has two false stop-codons induced by mutations ;CC accumulated in the provirus. ;CC The name has been changed from ATSASHA5I to ATCOPIA23_I (Dec.16, 1999). ;XX ;DR Positions 54664 58756 Accession No AB019224 GenBank (rel. 109.0) ;XX ;SQ Sequence 4093 BP; 1373 A; 661 C; 1143 G; 916 T; 0 other; ATCOPIA23_I agtggtagcagagcttttgttcttaaacgctcaaagaaatgagtgagaaagatggtttgagcattccaaa attcgacggagattacgaacactgggcaatgctcatggagaatctcatgaggtccaaggagtggtgggat ctcattgagcatggagttatgcagccagagagaaacgtgatcctgacgggagcccaaagaacagagcttg cagagagtaagctcaaagatttgaaggcaaagaattacttctttgcttcaatcgacaaggcaactctgaa gacgattgcaaagaaggacacagctaaagatatttgggagtccatgaaaacaaagtaccaggggaacaag aaggttcaaagcgcccaactgcagagactgcgaaggaactttgaagtgttagaaatgaaagagggagaca ccattgatgggtatttctcaaaggtgatggtggtggcaaatgacatgagaaaccttggtgagagcatgcc ggatgcaaagattgttgagaaaatcctgagaacattggtggagaaatacacatatgtggtgtgtgcaatt gaggagtcaaatgacatcacagaactctcagtggattcattgcagagctcactactagtgcacgaacaga agctgagtagacatggagatgatgagcgtgcacttaagattgagggcaggtgggattctagtggaggaag aggtcgtggtggacaccaaaaccgtggaaaaggaagaggaggatatcaaggacgtggcagaggtagcaca aacttcaacaaagaaacagtggagtgctacaaatgtcacagactggggcatttcaaattcgaatgcccgg agtgggagaagactgctcattatgcagaactggaggaagatgttctgctcatggcgcatgttgatattca aagagcaggaaacgatgaggtctggttcttagattcggggtgttcgaatcacatgtgcagcacaagagag tggtttgtggagtttgactcaacattcaagcatagtgttaaacttggagataacaggaagatgagtgtag aaggaagaggaagtctccgactcatcattaatggggcagcacaaaagataacaaaagtttactatgtccc aaagttgaagaacaatctcttgagtgttgggcagctgcagcagaagggactgagaatcatcattgaagat gatgtgtgtgagatctggcacaagcagcagagaagactactcatgttctcaactatgacaaaaaaccgga tgtttgtcatacaggcagcagtgagaggagacaaagaaaaagaagaagggaactgtctgcaagctgtttc agatgagaaagttgaggaactgtggcataggcgacttggacacctgaatcaaggaggaatgcagagtttg tcagagaaacagatggtgatagggatgcctatgcaaacaaagaccaatgctgcagagttgtgtgatgtat gcatgaagggaaaacagaacaggcttagcattccaaagaagagttcatggagagcaagtcggggtctcca attggtccacacagacatctgcggaccaataactcccacatcagaaggtggcaagaggtacatcattaac tttattgatgactatagtcgtaagtgctggacctatttcttgtcagagaaatcggaagctttgagagtgt tcaaagagttcaaggtggctgcagagagggaactcggagtgagtttgatatgcttgagatcagacagaga aggcgagtacaactctaatgcgtttcaggagttctgtaaggaacatgggattaaaagacaactcactgca gcatacactcctcaacagaatggagttgcagagaggaaaaacaggagcctgttgaacatgacaaggtgta tgctgtttgggatgtcagtaccaaggagattttggccggaagctgtgcaatatgcagtacacatattgaa tagaagtccctctaaagctcttgcagatgctacaccagaagaaatgtggagcaagcataagccatcaatc gatcacctaagagtgtttgggtgtgtagggtacgcactagtgccatatgagaagagaattaagttggatg aaaagagtagaaaatgtgtgatgctgggagtgagtaaagagtcaaaagcataccgcctgtatgaccctga gacaaagaagatcattatcagtcgtgatgtgcagtttgatgagaaactaaggtggaattgggaagaggat cagcaagaagactcacctaaatgggaagagagtgatgctgattctgaaaaaactgcagagaacgctgaaa atgaggagagagaagcagaagaggacgaacctgcagcagtcactgatacacctgcagcagtcacagatac acctgcagaaaacgaacaagctccagtcagaggaaccagtggcagaacgatacagccacctgtgtggatg aaggattatgtaacaggaggaaaaagcttgtttgttattgatggtgatgaggtaatggcgctgtatactg cagcagaggatccagagagcttcgaggaagcagcccaacatgagaaatggagaaaagctatggaagtgga gataaaatccatagaagataacaacacttgggagatcatagagctgcctgaaggtgcaaaagtaattgga gtaaagtggatttagaaaaccaaatacaatgagaaaggagaagtagacaagtttaaagccaggctcgtgg caaagggataccaccagaggcaaggaattgacttcgaagaggtgtttgctcctgtggccagatgggatac tataagaaccctacttgcaaaggctgctcaaaaggggtggaaagtgtttcaactggatgtcaaaagtgca ttcttacatggtgaattgaatgaagatgtttacatcgaacaaccacagggctttgaagtagaaggagaag aggagaaagtttacaaactcagaaaagctctctatggtctgagacaagcacctagagcatggtacagcag aatagaaagttattttgctaaggaggggttcaagaaatgctactgtgagcataccttgttcgtcaaagca gagcgtggaggggttctgattgtgagtgtgtacgtggatgatctcatatatacaggtaactcagactcca tgctagctgactttaaggcgtcgatgacaaaagagtttgctatgacagacttgggtttgatgaaatattt cttgggggtggaagtgattcaagatgacaaaggaattttcatcaaacaacaaaagtatgctgcagagata cttgaaagatttggtatggagaggtgtaattcggtcaaaaatccaattgttcctggaaacaagctttcaa aggaaggtgctggagcagaagttgatccaacaacattcaaacagctggttggaagcttaaggtacctaac tgcaactcgaccagatctcatttcttctgtgaatttggtgagtagatacatggaacatccaaatgagcaa cacatgttggcagtcaagagaatcctgaggtatgtacaagggacagcagggtttgaaatttagtattggc gtggtaacaaggaggagctggttggtttctctgacagtgagtatgcaggagacattgatgataggaaaag cacttccggctatgtgtttatgttgggaggaggagcagtatcatgggcgtcaaagaaacaagccatagta acgttgtcgacaactgaagctgagtttgtagcagcagctcatggagcgtgtcaaggaatctggttgagaa atgtacttgaagaaatcggtgaaacactagaagaaggaacagttatgtactgtgataacagctctactat caagctctcaaagaatcctgtactgcacggaaggagcaaacacattcatgtcaggtatcatttcctgcgt gaacttgtcaatgatggagtaatgcaaatcaagttctgtcctacacacgagcagttggctgatggcatga caaaggcacttaagttggcgacgttcgtgtatctaagagagaagatgggagtatgtctgaaagaagagta aactggaaaggagttccagtttaagggaaggat1