;ID ATCOPIA22I DNA ; ATH ; 4510 BP ;XX ;DE Internal region of ATCOPIA22 copia-like LTR-retrotransposon ;DE - a consensus sequence. ;XX ;AC . ;XX ;DT 28-APR-1999 (Rel. 3.3, Created) ;DT 28-APR-1999 (Rel. 3.3, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW ATCOPIA22LTR; ATCOPIA22I. ;XX ;OS consensus ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Charophyta/Embryophyta group; ;OC Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; ;OC Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; ;OC Arabidopsis. ;XX ;RN [1] (bases 1 to 4510) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (April, 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA22I is a consensus sequence of an internal region of ;CC ATCOPIA22 copia-like retroelement flanked by 1% divergent LTRs, ;CC ATCOPIA22LTR, and 5 bp-long target-site duplicates. ;CC The consensus sequence has been reconstructed based on three ;CC copies identified in Genbank (rel. 110.0). ;CC These copies are 99.5% identical to the consensus sequence. ;XX ;DR [1] (Consensus) ;XX ;SQ Sequence 4510 BP; 1203 A; 885 C; 1068 G; 1354 T; 0 other; ATCOPIA22I tggtatcagagcgcaatctgggtttttcgaattgagtatttcaagtgagttttctctgaagctatggctg atgctccaccaccacctccatctgtaattgaggtccgacgcacaatttcgccgtacgacttgacggcagc tgacaattcgggagctgtgatctcccatccgatactgaagacaaataactatgaagagtgggcatgtggt ttcaagacggcgttgcggtctaggaaaaagtttggtttccttgatggaaccattcctcaaccactagatg gttctccagatctagaagattggttaacgattaatgctttgttggtctcttggatgaagatgactattga ctcagagctgctgacaaatatctctcaccgtgatgtggcgagagacttgtgggaacagattcggaagcgt ttttctgtttctaatgggccaaagaatcagaagatgaaggcggatctcgcgacttgcaagcaagagggta tgacagtggaaggatattatggaaaactcaacaagatttgggataatatcaacagctatcgccctcttcg gatatgtaaatgtggtaggtgtatctgcaatcttggaacagaccaagaaaaagatcgagaagatgacatg gttcatcaatttctttatggactgaatgaaactaaatttcacaccatacggtcaagtttgacgtctcgtg ttcctctccccgggctggaagaggtttacaacattgtgcgacaagaagaagatatgttgaacaacagatc gtctaatgaagagagaaccgatgtcactgcttttgctgttcaaatgcggccacgttctgaggtaatctca gagaagtttgcaaattcagagaagcttcaaaacaagaaactttgtactcattgtaaccgtggaggtcatt cgccggaaaattgctttgtgttgattggatatccagagtggtggggagatcgcccaagaggaaaatcaaa ttcaaatggctcaacaagtcgtggcagaggaagatttgggcctggttttaatggaggacaacctcgtcca acgtatgtgaatgtcgtcatgactggaccgtttccatcttctgaacatgtgaaccgggttatcactgata gcgatcgtgatgcagtcagtgggcttactgatgagcaatggcgtggagttgttaagcttctcaatgctgg aagaagcgataacaagtccaatgctcatgaaactcaatcaggtacatgttctcttttcacttcttggata ctcgacacaggtgcttcacaccatatgactggaaacctggaattgttgagtgatatgcgatccatgtctc ctgttttaattatcttagctgatggaaataagagagttgctgtcagtgagggaacagttagattaggctc gcatctgatattaaaatcagttttctatgtcaaggagttggaatcagatttgatctctgttgggcaaatg atggatgagaatcattgtgtggttcaacttgctgatcacttccttgtgatacaggaccgcactacgagga tggtgactggaattggtaaaagagagaatggaagtttttgttttcggggaatggagaatgctgctgctgt gcacacgagtgtgaaggccccttttgatctatggcataggcgtttgggacacgcatcagacaagatagtt aatttgttgcctagagaacttttgtctagtggtaaagagattttggagaatgtatgtgatacatgtatgc gagctaagcaaacccgtgatacttttcctctaagtgataatagaagtatggatagttttcagctaattca ttgtgatgtgtgggggccttatcgaacaccttcttactccggtgctcgatatttcttgacaatcgttgac gattattctcgtggtgtgtgggtttatttgatgactgataaaagtgaaactcagaaacatttgaaagatt tcattgctttagttgaacgacaatttgacactgagatcaaaacagtaagaagtgataatgggactgagtt tctatgtatgcgtgagtactttctacacaaaggcattgctcatgaaacttcatgtgttgggactccgcat caaaatggaagggttgagaggaagcatcgacatattttgaatatcgcgagagccttgcgatttcaatcgt atttgccaattcagttctggggagagtgtatcttatctgcggcttaccttatcaaccgcactccctcgat gcttcttcaaggtaaatctccatatgagatgttatataaaacggctccgaaatactctcatcttcgtgta tttggttccttgtgttatgcacataaccaaaatcacaaaggagataagtttgcggcacgatcaagacgat gtgtatttgttgggtatccacatggacaaaaagggtggaggctgtttgatttagaagaacaaaaattttt cgtgtctagagatgtgattttccaggaaacagagtttccatactccaagatgtcgtgcaatgaggaagat gaacgtgtattggtggattgtgttgggccaccttttattgaagaagctattgggccaagaactattattg gacgaaatattggtgaagctacagttgggccgaatgttgcaactggcccaataatacctgaaatcaatca agaatcttcaagtccaagtgagtttgtctctctctcctctctcgatccttttttagtatcaagcaccgta cagacagcagatcttccactgtcatctacaacaccggcgccaatacaacttagacgtagttctcgccaaa cacaaaaaccgatgaagttgaagaattttgtcaccaatactgtgagtgttgaatcgatttcccctgaggc ttcttcctcctctctgtatccaattgagaaatacgtggattgccatcgattcacttcgtcgcacaaggct tttctcgcagctgttactgctggaatggaaccaacaacttacaacgaggctatggttgacaaagcttgga gagaggctatgtctgctgagattgaatctctgcgagttaatcaaaccttctcgattgtaaatttgcctcc aggaaagcgggctcttggcaacaaatgggtatacaaaatcaagtatcgatcggatggggcgatagagcga tataaagctcgtttggtagtcttgggtaattgtcaaaaagaaggcgtggattatgatgaaacttttgctc cggttgcaaaaatgagcacggtgcgtttgtttttgggagtggctgcggcccgtgattggcatgtacatca aatggatgtgcataacgctttccttcacggtgacttaaaggaggaagtgtatatgaaattgcctcaggga tttcaatgtgatgatcctagcaaggtatgtcgtcttcataaatctctgtatggtttgaaacaagctccaa ggtgttggttttccaagctctcttctgctttaaaacaatatgggttcacacaatctttgtcggattactc tctgttcagttacaacaatgatggtgtctttgttcatgtcctcgtatatgtcgatgacctgatcatttcg ggtagctgccctgatgctgttgctcaatttaaatcctatctagaatcatgttttcacatgaaagaccttg gcttgctcaaatattttcttggcattgaagtgagccgcaatgctcaaggattctacctatcccaaaggaa gtatgttcttgatattatttctgaaatgggacttttgggggctaggccgtctgcgtttccgcttgaacag aatcataagctctcgttgtctacatctcctctgctttcagactcttcacggtatcgtcgtctagttggga gactcatttacttggctgtaacacgtcctgagctatcatattctgttcacactcttgcacagtttatgca gaatccgcgtcaggaccattggaacgccgccattcgtgttgttcgctatttgaaatctaacccaggacaa gggattttactctctagcacctctactctgcagattaatggttggtgtgatagtgactatgctgcttgcc ctctcactcgtcgctctctcacaggatactttgtacagcttggtgatactcccatatcttggaaaacgaa aaagcagcccactgtcagtcgctcttccgcggaggctgaatatagagctatggcattccttactcaagaa ctcatgtggctcaagcgggtgctttatgatcttggtgtctctcacgttcaggctatgcgcatcttctctg acagtaaatctgcaattgctctcagtgtcaatccagttcagcatgagcgcaccaaacatgttgaggtgga ttgtcattttatccgcgatgctattcttgatggtataattgcgacttcgtttgttccctctcacaagcag cttgcagatattctaactaaggctttgggtgaaaaggaagttcgttactttctgcgcaagttgggcattc tcgatgtgcatgctccaacttgagggagga1