;ID ATCOPIA21I DNA ; ATH ; 4502 BP ;XX ;DE Internal region of ATCOPIA21 LTR-retrotransposon. ;XX ;AC AB010693 ;XX ;DT 12-APR-1999 (Rel. 3.2, Created) ;DT 12-APR-1999 (Rel. 3.2, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; LTR; ;KW ATCOPIA21LTR; ATCOPIA21I. ;XX ;OS Arabidopsis thaliana (strain:Columbia) DNA, clone_lib:Mitsui TAC ;OS clone:K21C13 ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4502) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (March 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA21 is a putative active copia-like LTR retrotransposon, ;CC it has 5 bp-long target-site duplication, and its LTRs, ;CC ATCOPIA21LTR, are identical. Its internal region, ATCOPIA21I, ;CC encodes copia-like polyprotein. ;XX ;DR Positions 43282 38781 Accession No AB010693 GenBank (rel. 109.0) ;XX ;SQ Sequence 4502 BP; 1194 A; 1234 C; 835 G; 1239 T; 0 other; ATCOPIA21I tggtatcagagcagtgattctaaaagacctaattttttttttttttttaaaacaaaagagccgcctctct cttcgacctttcttcttcttctcgctccccttctttctctacaagcttgctcttcaagcttcatcatttc cggctatgtcttcctcctcagaaaccgttgttgttgctgattctacctctctcctcaatgtgaacatgtc caatgtcacaaagctgacatcaacaaactttctcatgtggcgtcgtcaagttcatgcgctattggatggg tatgacctcgccggttacgttgatggttcgatcgaagaacctcacaccacagtcactgtccatggtgtta cctctcccaatccagaatacaaactctggaaacgccaggataaactcatttactctggcctcatcggtgc catctctgttgcggttcaacctctcttgtcccaggctaccacctctgcccagatctggcgtaaactcgtt gacacttacgcaaatcctagccgtggccacaagcaacagatccgtgaacaaatcaaacaatggaagaaag gttctcgttccattgatgactacgttcttgggctcactactcgttttgatcaacttgcactacttgaaga agccataccacatgaagatcaaatcgcgtacatacttggcggtctctccgatgattataggcgtgtcatt gatcaaattgaaggacgtgatatttcgccttcaatcacagagctacacgagaagctcattaactttgagc ttaaactccaagcgatggtccctgattcctctactccggttaccgctaacgcagcctcctacaacaacaa caacaacggccgtaacaatcgctcttcttctcgtggcaatcaaaacaaccaatggcagcagaatcaaaca caacagtctcgctccaacaatcgtggctctcaaggcaaaggctatcaaggtcgttgtcaaatctgcggtg tacatggtcatagtgcgcgacgatgctctcagtttcagccctatggtggcagtggtggttcccaatcagt gcctagcggttatccaaccaacggttattcaccttctccgatggctccatggcaaccacgagctaacatc gccactgctcctccgtttaacccatgggttctagatagtggtgcgacacaccatctcacctcggatttgg caaatctctcaatgcatcagccctataccggtggagaagaagtaaccatagcggatggttcgggtctacc tatttcacacactggttcagctttactccctacaccatctcgatctcttgctcttaaagatatcttatat gttcctaatgttagcaagaatcttatatcggtttatcggctgtgtaatgctaaccaagtttcggtggaat tctttcccgcacattttcaggtgaaggatctcaacacgggggcccgattactccaaggcagaactaggaa tgagctatatgagtggccggttaaccagaaatccatcactatccttaccgcgtctccatcaccaaaaacc gacctctcttcttggcatcaacggcttgggcatcctgctttacccattttaaaagatgttgtttctcatt ttcatttaccactttcaaacactattccaaaacagcttccatgttcggactgttctatcaataaaagtca caaattaccatttttcacaaacaccattgtctcttctcaacctcttgagtatctatacaccgacgtttgg acgtctccatgcatttcagttgataactacaagtattaccttgtcattgttgatcacttcacaagatata catggatgtatcctctcaagcagaaatcgcaagtgaaagatgtgtttgtggctttcaaggctttagtgga aaaccggtttcagtcacgaatacgaaccttatactctgacaatggcggtgagttcattggccttcgcccg tttcttgctgctcatgggatttctcatctcacaagcccgcctcatacaccagaacataatgggttagctg aacgaaaacatcgtcatatcgtagaaaccggtcttgcgcttctcactcatgcgtcattacccaagacatt ttggacgtatgcttttgcaactgcggtgtatctaatcaataggatgccaacggaggtcttacaaggcacg tctccttatgtcaaactctttcaaatgagtcctaattatcttaagctccgagtatttggctgcttgtgct acccatggctacgtccgtacaacactaataagcttgaagcacggtcaacgatgtgtgtgtttcttggata ttcgcttacacaaagcgcatatttgtgtctcgacatagccaccaaccgcatctacacttctcggcatgtc cagtttgttgaatcaagttttccgtttgcttctcctcgaacatcggaaaccgactctacacagacaatgt ctcaaccgaccaccaccaatgttatcccgcttctacaacgaccgcctcatatagctcctcctactgcctt gcccttgtgtccgatctttcactctccgccgcactcaccgtcgtctcctgcctctccaccttcagagcat gtgccattgaccgccgcttcatcatcgtcaaacgccattaacgacgacaatatttcctccacaggccaag taagtgtttctggcccaacttcacaaagcccacatactacacctacaaaccaaaacacaagcccactaag caaaagcccaaatccaaccaatacaaatcaatcccaaaattccacgcctcctacttcgccaactacgtcc gttcaccaacactcacctactccgtcaccactaccacaaaatccaccgcttccaccacctccacaaaacg accaccctatgcgtactcgagccaaaaatcaaatcacaaaacctaaaaccaaatttaacctcaccacatc tctcacgtcttctaaaccgacaataccgacgacagtagcacaagctctcaaagatccaaattggagaaat gcaatgtcagaggagatcaatgctcaaatgaaaaaccacacatgggatttggtgtcaccggaggaagcta aacatgttatttcttgtaagtggattttcacgcttaaatataacgttgatggctctattgcaaggtataa ggcgcgacttgtagctcgaggcttcaaccaacagtatggcattgactattcggagacgtttagtccggtg ataaagtcaaccactattcgtactgttctagaggtggcggttaagcgaaattggagtattcatcaagtcg atatcaacaatgcatttcttcaaggaactctaaacgaagaggtgtatgtttcgcagcccccgggatttat agatcgtgatcggccaagtcatgtttgccgcctcaataaagctttatacggcctcaaacaagctcctcgg gcttggtatcaagaactacgacgatttctcctacaagctggttttgtcaattctctagccgatgcctctc tatttatctataatcggcataataccttcatgtatgttcttgtatatgtcgatgacataatcattgcagg agaaaacgctcttgtacaagccttcaatgcctcacttgccagtcggttttctctaaaggatctagggcct ctcagttatttcttggggatcgaggccactagaacttcacgcggcttacacctaatgcagcgaaaatata taaccgacttactaaagaagcacaatatgcttgatacaaagcccgtgtccacaccgatgtcaccgacgcc aaagctctctcttctctccggaacggctcttgatgatgcaacggagtatcgcaccgtccttggcagcctc caataccttgcgtttacacgcccagatatagcttttgcggtaaatcgcctttctcagttcatgcatcgtc caaccaatgaacattggcaagctgcaaaacggattcttcggtatctcgcgggaacaaaatcgcatgggat cttcctccgctccgatacgcctctaacaatacatgccttctcggatgcagattggggatgtgatctggat gcatatctctcaaccaatgcctacatcgtttattttggtggcagtccggtatcatggtcctcaaagaaac aacgaagtgtcgctcgctcatctacggaggcagaatatcgagctgttgcaaacaccgcctcggaactacg ttggctctgctctcttcttttggaaatgggcatatcacaaaccacagtcccggtcatttactgcgacaac attggcgccacatatctatgcgcgaacccggtgtttcattctcgtatgaaacatgtggctcttgattatc actttgtcagaggttacattcaatccggagcattgcgagtttctcatgtttcgactaaggatcagctagc tgacgccttaaccaaacccttaccacgtccacgttttacggagctcaatagcaagattggagttcaagaa ttacctccatcttgagggggtg1