;ID ATCOPIA17I DNA ; ATH ; 5034 BP ;XX ;DE Internal region of ATCOPIA17 copia-like LTR-retrotransposon. ;XX ;AC AF080118 ;XX ;DT 12-APR-1999 (Rel. 3.2, Created) ;DT 12-APR-1999 (Rel. 3.2, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW ATCOPIA17LTR; ATCOPIA17I. ;XX ;OS thale cress. ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Charophyta/Embryophyta group; ;OC Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; ;OC Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; ;OC Arabidopsis. ;XX ;RN [1] (bases 1 to 5034) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (March 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA17I is an internal region of a recently active ATCOPIA17 ;CC copia-like retroelement flanked by 2% divergent ATCOPIA17LTR LTRs ;CC and 5 bp-long GTGGA target-site duplication. ;CC Its ORF encoding copia-like polyprotein has several false stop-codons ;CC and frameshifts induced by mutations accumulated in the provirus. ;XX ;DR Positions 23824 18791 Accession No AF080118 GenBank (rel. 109.0) ;XX ;SQ Sequence 5034 BP; 1436 A; 961 C; 957 G; 1680 T; 0 other; ATCOPIA17I tggtatcagagcatatcatttgagcttccgcatatcatcggagatgagtctttcattgaatcatctttct cttatgagagtttttcgattcctacaatcgtttgttgcaatttgcaatttcttcgtcagctatctaattt tggttctgattcttcttctttccttcgattgaccttttgtggtgacgaatctcactttcttttcatttcg tctcactttctttgatttttctttaacaatttgttaagaatgggttctatgaacaatccgttgaattctt caagtcttcgtccacctccagctagtgttcctgaacaatcgcgatatcaagctgatcaatatgagaatcc gcatcatttgcatacgagtgaccacgcaggtttggttctagtctcagaacgccttaatacagcttcagat ttccattcttggcgaagatctatttggatggcattgaatgttaggaataagcttggattcatagatggaa cgattgtgaaaccaccattagatcatcgtgattatggtgcttggtctcgttgtaatgatactgtgtctac ttggttgatgaactctgtgtcaaagaaaataggccagagtctccttttcattccaactgctgaaggaatt tggaagaatatgttgtctaggtttaagcaggatgatgctcctagagtgtatgatatagaacagagactta gcaagattgagcaaggttctatggatattagtgcttactatactgaattgcagacactttgggaagaaca taagaattatgtggatcttccagtgtgcacttgtggtcgttgtgagtgtgatgctgcagttaaatgggaa agattacagcagcgaagtcatgttactaagttcttgatgggtttgaatgagagttatgaacaaactcgta ggcatattttgatgctaaaaccgatacgtacaattgaagaagctttcaatattgttactcaagatgagag acagaaagccatacgtcctactcctaaagttgataatgtggcgtttcagactgtttcttataacagtggt gatccttatatggagaatatggaaaatggattcattgcggcttataatacagcaagaccagctcaaatta cctctgtgtactaactgtggaaaggttggtcatactgtgcagaagtgttacaaaatcattggctatcctc ctggctataaggcagctacatcatacaggcaacctcaaatacaaactcagcctagaatgcagatgccaca acaatctcaaccaaggatgcaacaacctgtagcagcacaaatgcagacaaacatgccaaatacaggacca atgcagatgatcccttatgcaaatcaaatgcagatggttccatactcgaattcaatgcagatggcgaatg ctgcttatgctgaataaggttcttttgttccaatgatgccgcatgttaccagtggaggtaataatctaaa cttgcaagatctttctcaagatcagatacaacatcttatttcacaattcaatgctcaagttcgggttcaa gagcctgcagctacttctatttatacctctagtcctactgctactattactgaacatggcttgatggcac aaacatctacttctggtacaattccttttccttctactagcttgaaatatgaaaataataatctcacctt tcagaatcatactctttcttccttacaaaatgttttatcaagtgatgcttggattattgatagtggtgct tctagtcatgtctgttcggatttaacaatgtttagggaattaatacatgtgtctggtgtaactgttacat taccaaatggtactagggttgcaattacacacacaggaaccatttgcatcacgtctactctcattctgca taatgttttacttgttcctgatttcaaatttaacttgattagtgtctgttgtcttgttaaaaccttgtct tactcggctcatttctttgctgattgttgttatatccaggaacttactcggggcttgatgattgggaggg gtaaaacctacaataatctctatattcttgagacacaacgtacatccttctcaccatcactacctgcagc tagttcattcactggaaccgttcaagatgattgtcttctgtggcaccagcgtctaggcatccgtcattac ctgcattacagaaacttgttagttcaattccttctttaaagtctgtttcatctactgcttcgcattgtag aattagtcctttagctaagcagaaaagattagcatatgtttctcataataatctagcgtctagtccattt gatttgattcatttagacatttggggtccttttagtattgagtctgttgatggttttagatacttcttaa ctttggttgatgattgtacaagaaccacttgggtttatatgatgaaaaataaaagtgaagtttccaatat atttcctgtctttgttaagctcattttcactcaatataatgccaaaattaaagcaattaggtctgataat gtaaaagaactagctttcaccaaatttgttaaagaacaaggaatgatacatcaattttcttgtgcttaca ctcctcaacagaattctgttgttgagcgtaagcatcaacacttgttaaacatagctaggtctttattatt tcagtcgaatgtacctttgcaatattggagtgattgtgttcttactgcagcttatttgattaatcgtttg ccttctccattgttagacaacaaaactccatttgaacttcttttaaagaaaattccagattatactcttt tgaaaagttgtctttgctatgcatcaactaatgttcatgataggaataagtttagtcctagagctagacc atgtgtgtttttaggatatccttcaggatacaaaggttataaggttttagatttagagtctcattccatt tccattactcgtaatgtggtttttcatgaaacaaagtttccatttaaaacaagtaaatttttaaaagaat ctgttgacatgtttcctaattccattttaccattgcctgcaccattgcattttgtagaaagcatgcctct tgatgatgatttacgtgctgatgataacaatgcttctacatctaattctgcatcatctgcatcatctatt ccacctttacctagtactgtgaatactcagaacacagatgcattagatatagatactaattctgtaccta ttgctagaccgaaaagaaatgctaaagcacctgcttatttgtctgagtatcactgtaattcggttccttt tctttcttcactttcacctactacttctacttccattgaaacaccatcatcatctattccacctaaaaag atcactactccatatcctatgtccacagccatttcctatgataaacttactccactttttcattcttata tatgtgcttataatgttgaaactgagccaaaggcttttactcaagccatgaaatctgaaaagtggactag agcggctaatgaagagcttcatgctcttgagcagaataagacttggattgtggaatctttgactgagggt aaaaatgttgtaggttgcaagtgggttttcacaataaagtataaccccgatggaagtattgaacgatata aagcacggttggttgctcaaggctttactcagcaggagggaattgattatatggagactttttcacctgt ggcaaagtttggcagtgtgaaattgttacttggacttgctgctgcaactggttggagcttaacgcagatg gatgtttctaatgccttcttacatggagagcttgatgaggaaatctacatgagtctgccacaaggttata ctccaccaactggtataagtttgccttctaaaccggtatgtcgactcttgaaatctctttatggcttaaa acaagcatctagacagtggtataagagattatcttcagtcttcttgggagcaaactttattcagtcacct gcagataacactatgtttgtgaaagtcagttgtacttcaatcattgtggtgttagtctatgttgatgact tgatgattgcaagtaatgatagctcagcagtggagaatttgaaagaattattgagatctgagttcaaaat aaaggatttaggaccagctagattttttctaggattggagattgctagatcttctgagggaatttctgtc tgtcaacgcaaatatgctcaaaatttgcttgaagatgtagggctttctggttgtaaaccaagctcaatcc ccatggatcctaacctgcacctgactaaagagatgggaaccttactgccaaatgcgacttcctatagaga gcttgttggacgattgttatacttgtgcattactcgtcctgatataacttttgcagtacatactttgagt cagtttctctctgcaccaactgacattcatatgcaagctgctcacaaggttctgcgatatctcaaaggta atcctggtcagggtttgatgtattctgcttcttctgagttgtgtttaaatggtttctcagatgctgattg gggtacttgcaaagattcaaggagatctgttactggtttttgcatttatcttggtacatctttgattaca tggaagagtaagaagcaatctgtggttagtcggagtagtacagaatctgaatatagaagcttagcacaag ccacttgtgagattatctggttgcaacagctgctcaaagacttgcatgtgactatgacttgtccggctaa actcttttgcgacaacaaatctgcactacacttggcgacgaatccagtctttcatgagcgtaccaagcat attgaaatcgactgtcacactgtaagagaccaaatcaaggctggaaaactgaagactctacatgttccaa caggaaaccagcttgcagacattctaaccaagccacttcacccaggtcctttccatagtttactcaaacg catgtcattatcaaatctttatctccctcttcaacagcaaggaagataagatttgaggggggtg1