;ID ATCOPIA16I DNA ; ATH ; 4790 BP ;XX ;DE Internal region of ATCOPIA16 copia-like LTR-retrotransposon. ;XX ;AC AC005508 ;XX ;DT 12-APR-1999 (Rel. 3.2, Created) ;DT 12-APR-1999 (Rel. 3.2, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW ATCOPIA16LTR; ATCOPIA16I. ;XX ;OS thale cress ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4790) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (March 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA16I is an internal region of a recently active ATCOPIA16 ;CC copia-like retroelement flanked by 1% divergent LTRs, ;CC ATCOPIA16LTR, and 5 bp-long TATAY target-site duplication. ;CC Its ORF encoding copia-like polyprotein has several false stop-codons ;CC induced by mutations accumulated in the provirus. ;XX ;DR Positions 81224 76435 Accession No AC005508 GenBank (rel. 109.0) ;XX ;SQ Sequence 4790 BP; 1373 A; 915 C; 938 G; 1564 T; 0 other; ATCOPIA16I tggtatcagagcatttcctcacacaaatctggtgattttcaccatcgtttcttcaatttcttcttaatca caccttttctgatcttctttcttctccgattgtctttccgcgaccttggatttgaagaaaaatggtgaag aagggaggaaaaatgaagactcgcggttctacacctgatgatgaaggttcagctgtcagatctgttcgtg aagcagcaatccttgaagatcagaagctcacgacactgaaacaacagctagctcaacgatcggacgttta tggtggaaatgggtttaaggtttctgactctggtgaaaacccactgctcctccattcctccgatcatcca ggtttatctattgtagctcatattctggatggtagtaactataacagttggtcgattgcaatgagaatta gcttagatgcgaaaaacaagctgggttttgttgatggttctttgttgcgaccctctgttgatgattctac ttttcggatctggagtagatgcaacagtatggtgaagtcatggattcttaatgttgtgaacaaggagatt tatgacagtatcttatattatgaggatggtgttgaaattggattgatttgtttactcgttttaaggtgaa caatttgcctaggaggtatcaacttgaacaagctgtgatgactcttcagcagggcaaactggatctctct acatactttacgaagaagaagaccttgtgggaacaacttgctaacacaaagtctcgcagtgtaaagaaat gtgattgtgaccaagtgaaggagctgctagaagaggcagagacaagtcgagtgatacaatttttgatggg tttgagtgatgattttaacactattcggagtcaaattttcaacatgaagccacgaccagggcttaatgaa atctacaatatgctagatcaagatgaaagtcagcgtttggttgggtttgctgcaaaatcagttccaagtc caagtccagctgcttttcaaactcaaggagttctcaatgatcagaacactattctactagctcaaggtaa cttcaagaaaccaaaatgtactcattgcaaccggattggccacactgtggacaagtgctacaaagtccac gggtatcctccaggtcatccacgagccaaagagaacacttatgttggaagcacaaacttggctagtactg atcagattgagactcaggcacctccgactatgtctgccactggacatgagactatgtctaatgatcacat ccaacaactgatctcatacttaagcactaagctccagtcccctagtatcacttcatgttttgacaaggct atagcttcaagttcaaatcccgtaccttctatctcacagataactggtacattcctttctttatatgact ctacttattatgacatgttggactggagcttagtgcttaagtatgagatcagttgttggatgtgatcatt agacatactctcatgtccagtggcagacaaggctatagcttcaagttcaaatccagtaccttctatctca cagataactggtacattcttttctttatatgactctacttattatgaaatgttaacctcttctataccta ttgaaactgagttgtctcttagagcttgggttatagattcgggggctagtcatcatgttactcatgaaag gaatttataccacacttacaaagccttagatagaacctttgttagactccctaatggccatacggttaaa atagagggcactggttttattcaactcactgatgctttgtctttacacaatgttttgtttattcctgaat ttaaatttaatcttttgagtgttagtgttttaactaaaactttacaatctaaagtgagttttacatctga tgaatgtatgattcaggctcttaccaaggaattgatgcttggcaaaggtagtcaagtcggcaacttatat attctgaatctggataaaagtcttgttgatgtgtcgtcttttcctggtaagtctgtatgttctagtgtta agaatgaatctgaaatgtggcataaacgtttaggtcacccttcttttgcaaagattgatactctttctga tgttttgatgttacctaaacaaaagattaataaagattcttctcattgtcatgtttgccatttatcaaaa cagaaacatttaccttttaaatctgtgaatcacattcgtgaaaaagcttttgaattggttcatatagata cttggggaccgttttctgtgccaactgttgatagttataggtatttcttgacaattgttgatgattttag tcgtgctacttggatttatttacttaaacagaaatctgatgttctcactgtttttccttcattcctgaaa atggtagaaactcaatatcacactaaagtttgttcagttaggtctgataatgcacatgaattaaaattta atgagttatttgctaaagaaggaattaaagctgatcatccatgtcctgaaactcctgaacaaaattttgt agtagagagaaagcatcagcacctgttgaatgttgctagggctcttatgtttcaatctggaattccatta gaatattggggagattgtgttttaacagctgtgtttcttattaatagattactctcacctgttataaata atgaaactccttatgaaagactaactaagggaaaaccagattactctagtcttaaagcctttgggtgttt atgttattgttctacttctcctaagtctaggactaagtttgatcctagagccaaagcttgcatattttta ggctatccgatgggttataaagggtacaagctattagatatagagacatactcagtttctatttctcgac atgtcattttttatgaggatatttttccttttgcttcatctaatatcacggatgctgcaaaagacttctt tcctcatatttatctccctgcaccaaacaacgatgaacatctgcctctagtgcaatcatcttccgatgct cctcacaatcatgatgagtcatcatccatgatttttgttccttctgaacctaaatcaactcgacagagaa aactgccttcccatttgcaggactttcattgctataataatactcctactactactaaaacttcccctta tccattaacaaattatatttcttattcatatttatctgagccttttggagcttttattaatataatcacc gccacaaaattacctcaaaaatattctgaagctaggctggacaaagtatggaatgatgctatgggaaagg agattagtgcatttgtgagaacaggtacatggagcatatgtgatcttcctgctgggaaagttgcagtagg ttgcaaatggataatcactatcaaattcttagcagatggaagtattgaacgtcataaggcgcgtcttgta gctaaaggttacactcagcaagagggcattgacttctttaatactttctctcctgtggctaaaatggtta cagtcaaggttcttctttcacttgcaccaaagatgaaatggtatttacatcaacttgacatttctaatgc ccttcttaatggtgaccttgaggaagagatatacatgaagctgccacctggatattcagaaatacaaggt caggaagtctctcctaatgctgtgtgtagattacacaaatctatttatggtctcaaataagcttcccgac agtggttcatcaagtttaaaaccactttggttagtcttggatttgagaaatgtcatggtgatcatactct atttgtgaaagctcaagatggattctttttggtggttctggtttatgttgacgatatacttattgcgagt actacagaagctgcatctgctgaactaacttcgcaactgagtagttttttccagttgagagaccttggag aaccaaaattctttcttgggattgagatcgccaggaatgcagatggaatatccttatgtcaacgaaagta tgttcttgacttgttggcttcttctgatttctctgattgcaaaccctcctccatccccatggaacctaat cagaagctctctaaagatactggaactttacttgaagatggtaaacagtatcggcgaattcttggcaaat tacaatatctctgcttgacaaggcctgacatcaactttgctgtctcgaagcttgcccagtattcttctgc tccaactgatatacatcttcaggctcttcacaagattctgagatacttgaaaggtactattggtcagggt ctcttttatggcgctgatacaaactttgacttgagaggtttctcagattcagattggcagacttgtcctg atactagaagatgtgttactggttttgctatatttgtgggtaattctctggtttcttggcgctcgaagaa gcaagacgtggtctctatgagttcagctgaggctgagtatcgtgcaatgagtgttgctactaaggagctc atttggctgggatacatcctcacagcttttaagattcctttcacacaccctgcatacttatactgtgata atgaggctgctttacatattgcgaataattctgtcttccacgagcgaaccaaacatattgagaatgactg tcacaaagtcagagagtgcattgaagcaggaattctcaagacgatatttgtcaggactgataatcagctc gctgacacactaaccaaacctctatatccgaaacctttccgggaaaacaacagcaagcttggtcttctga acatttatgaagctcaagcttgaggggggc1