;ID ATCOPIA15I DNA ; ATH ; 4478 BP ;XX ;DE Internal region of ATCOPIA15 copia-like LTR-retrotransposon. ;XX ;AC AF096371 ;XX ;DT 12-APR-1999 (Rel. 3.2, Created) ;DT 12-APR-1999 (Rel. 3.2, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW ATCOPIA15LTR; ATCOPIA15I. ;XX ;OS thale cress ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Charophyta/Embryophyta group; ;OC Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; ;OC Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; ;OC Arabidopsis. ;XX ;RN [1] (bases 1 to 4478) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (March 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA15I is an internal region of a recently active ATCOPIA15 ;CC copia-like retroelement flanked by 4% divergent LTRs, ATCOPIA15LTR, ;CC and 5 bp-long AACTC target-site duplication. ;CC Its ORF encoding copia-like polyprotein has two false stop-codons ;CC induced by mutations accumulated in the provirus. ;XX ;DR Positions 76316 71839 Accession No AF096371 GenBank (rel. 109.0) ;XX ;SQ Sequence 4478 BP; 1149 A; 927 C; 932 G; 1470 T; 0 other; ATCOPIA15I tggtatcagagccaacgagctaagtttttgttgtttccgatcagatttcttcttctccgatctcgttttt ttcttgttcactactcgtttttctgtaaagatggtggctgttgctcgagtaactcggaaatccactcgtt caaaggcgtcgataagctccgttccatggaaatcgtcgcgatccactggtctcacagtctctcctccgat ctctcctccagctgtagatctgctctctgctggcgcatcgcgagctgttgtgacttcagattccatggat ccgactcagtctccgttttttatgcacagtggtgatcatccaggtttgaatctcgtctctatccgcttag atgagactaactatgatgattggagtgcagcgttgcggatctcgttagatgctaagaataagattggttt tgttgatggttctttgcctcgtccacttgaatcggatgggaactttcgcctttggtccagatgtaatagt atggtgaaatcatggttgttgaactctgtgtctccgcagatttatcgtagcattctacgcatgaatgatg ctacagatatctggcgtgacatttatggacgttttcatatgactaatcttcctcgtacgtacaatctgac acaggagatccaggattttcgccagggttctctttctctatctgagtactatactcagttgcgtattctt tgggatttgttggacagtacagaggaacctgatgatccttgtacttgtggtaaagttcttcgtctgcaac agaaggcagagagagctaaaactgtcaaattcttggcaggtttgaatgagtcctactctatagtcaggag acagatcattgcaaagaaagccttgccttctctggttgaagtttacaatattcttgaccaggattacagt cagaaaggtttctctaccaatgtttctcctcctgctgcttttcaggtctctaagatatcttctactgctt tgactcctaagatttgctatgttcagaatggacctaataaagggcgtccaatctgttcattctgcaacaa ggtgggacatattgcagagaaatgttacaaaaagcatggttaccctcctggttttaaaggcaaactacca gagaagggtaccaaacctcaaccggttgctgctcaggtctctttattgcctccgatggttccaactcagg ctactctagatggtctgcttggtaatctctccaatgatcaacttcagaacttcatagccttgttcagttc tcaactgaagtcacaaccaactgcttcttcttcagatgctggaatttcacgttctcctattgattacact ggtatctcattctctaactctacatactactttgttggtatattgaatgtatcccaacatactctttcca ctgaaacttgggtgatagactctggtgcaactcatcatgtttgccatgataagagcctatttgtttcttt ggatcattctgtggtgagttatgtgaatctcccaacaggatcacgtgttaaaatcagtggagtgggttca gtacagataaatgaaaacattcttcttcgaaatgttttatttctccctgagtttcgtttgaatctgatca gcatcagtagtttgacttcagatattggttcaagagtgatctttgatccgtcatgttgtgaaatacagga tcttaccaaggacctgagaattggcagaggtagacgcattggcaacctctatgtgttggatactacacct ccattggattcagtctctgttaatgcggtggtggatgttagtttatggcacatgaggatgggacatccag cttactcaagactggatgctatttcagacattttgaggactactaaacacaagaataaaggatctgctta ttgtcacatttgtcatttggctaagcagaagaagttgtcttttcagtcttcaaacaatatttgtaattca acttttgagttattacatatagacctttggggacccatttcagtggagactattgatggttttaaatatt ttttgaccattgttgatgatcattcacgagctacctgggtttacttactcaagactaaatctgaggttct tagtgtgtttccggcttttgtcacccgtgtagagaatcagtacaacgtcaaagttaaggcagttcgatct gataatgcacaggaattgaaatttactgagttttacaaggctaaagggatagtttcttatcattcatgtc ctgagacacctgaacagaactcagtggttgaaaggaaacatcaacatatactcaacgttgctagagcttt gatgtttcaatccaaggttgctttaccttattggggagactgcatattgacagctgtgtttcttattaat agaacaccatctcaattgctttctaataaaactccatttgaggttcttacaggtaagaaacctgattatg agcagattcgcacctttggatgtctatgttatggttctacttctcctactcaacgtcacaagtttcagcc tagagctcgggcatgcatctttctgggttaaccgtctagctacaaagggtacaagatcatggatttggaa agcaataaagtcttcatttccagaaatgttacctttcatgagacagtctttccaatggcatcaccacact ctgctgactctccatcccttgtcacaccaatggattctttgccctgaggtaatcccaattccatttctcc ctctccatcacaaatttctccatcaacacaaatttcttcccatcgagcacgcaaacttcctgctcactta aatgactatcattgctattctttaaacaatgaagtcactcatcccatttcttctttcatctcctactcaa aaatctctccctctcacttgttatacattaataacatcactaaaattccaattcctcaatcatattctga ggcaaaggattctaaagagtggtgtgatgctattgatacgaaaattggtgcgacggaagagaaagacact tgggaggttacaagtttacctaaaggaaagaaggcagtgggttgtaagtggatttttactctgaagtttc atgctgatgggagtcttgagcggcataaggctaggctggttgctaaggggtacactcagaaagaaggttt ggattatactgacaccttctctccggttgcaaaaatggctactattaaaatgttgcttaagatttctgca tctaagaagtggtttttgactcaacttgatgtttctaatgcgtttttgaatggagatttggaggaggata tatatatgcgtttacctgaaggttatgcagacaataagggggaccaattgccaaagaatgttgtgttaag actcaagaaaacgatttatggtctcaaacaagcatctcgtcaatggttcttgaaattttctaattgtctg ttggatttgggttttattaaaggacatggagatcacactttgtttgttcgctgctttggtggtgagtttc ttgctgtcttggtctatgtagacgacattgttattgctagcacaatagagggtgttgcagctcagttaac caatgctctgaaggagagtttcaagcttcgtgaccttggccctttgaagtactttttgggtctggaaatt gctaggactgctgcaggcatatccatttgtcaacgtaagtatgctttggaacttcttgctttcactggaa tgttggattgcaagccttctactattcccatggttccaaatctgaaactttcaaaggctgatggagaatt gttggaggatcgtgagttttatcgcagtctggtggggaagctgatgtatctcactataacaaggcctgat attactttcgctgtgaacaagctttgtcaatactcagctgctccacggacttcacatctgactacagtct acaaagttttacaatatattaagggtacagttggacagggacttttctactcttctgatcctgaccttac ccttaaaggctttgcagactctgattggggaacctgtcctgacactcgtcgttcaactacagggttaact atgttccttggttcttctttgatcacgtggaggtccaagaaacagcccactgtttcaagatcttctgctg aagcagagtatcgagcattagccttggcttcctgtgaaatggtatggcttgcttctttactcttagactt gaagatcatcacagggtcagtccccatagtcttctctgatagtaccgctgcaatttacatcgctaccaac cctgtttttcatgagcgaacgaagcacatcgagatcgattgccatttagttcgagaacgcttggataaag gtctcatcagaatgttgcatgttcggacagaggatcaggttgcagacatcttgactaaaccattatttcc gcatcagttctcttaccttatgtccaagatgagtcttcataatatttttgcctcatcttgagggggac1