;ID ATCOPIA14I DNA ; ATH ; 4690 BP ;XX ;DE Internal region of ATCOPIA14 LTR-retrotransposon. ;XX ;AC AB018121 ;XX ;DT 12-APR-1999 (Rel. 3.2, Created) ;DT 12-APR-1999 (Rel. 3.2, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW ATCOPIA14LTR; ATCOPIA14I. ;XX ;OS Arabidopsis thaliana (strain:Columbia) DNA, clone_lib:Mitsui P1 ;OS clone:MXE2 ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4690) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (March 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA14I is an internal region of a recently active ATCOPIA14 ;CC copia-like retrovirus flanked by 1% divergent LTR, ATCOPIA14LTR, ;CC and 5 bp-long GAATA target-site duplication. ;CC Its ORF encoding copia-like polyprotein has several frameshifts ;CC induced by several mutations accumulated in the provirus. ;XX ;DR Positions 75181 70492 Accession No AB018121 GenBank (rel. 109.0) ;XX ;SQ Sequence 4690 BP; 1326 A; 1026 C; 953 G; 1385 T; 0 other; ATCOPIA14I tggtatcagagcaaaacctaaactactcaagggtttgttcgattctatgatctaaacttccgctaaaaca actctgtttcttattttctgttttttaaaactatctcacaaaggagaaaatcatggccacgaattctgct acgtcgtcggctctgataacctccaccaccaatcgccgtacaatatctccatacgatttaacttccggtg agaaccccggaaccgtgatctccaagcctttgttgcgtggtccaaactacgacgaatgggccaacaacat atgcttggctttgaaagctagaaagaagttcggttttgtcgacggttctatacctcaaccaccagacgac gatcccgactttgaagactggattgctaacaacgcgcttcttgtctcttggatcaaactcacgattgaag aaaagctctcttcgtccctatctcacatcaatgactctcatgaactctggactcatattcaaaagagatt tggagtgaaaaacggccagagagttcaaagattgaaaactgaattggcaaattgcagacaaagaggtctt gctatcgaagcatattacggcaaactaactcagctgtgggggagtcttgccgattaccaaaacgcaaaaa caatggaggaggttcgaaaagagcgagaagaggacaaattgcatcagtttttaatgggtctagatgatac catctacggagccgttaaatcaaatttgctttcacgtgttcctttaccaagcctagaagacgcttacaac gctttaactctggacgaggaatccaaaaatctaagtcgcactcatgaagaaagatcagatggcgtcagtt ttgctgttcaaaccaattcttctaggaatttttctgacaacagaggaagctctgtttcatgtaccatctg tggacgcaccgatcacattgccgacaactgcttcaagaaaataggctatctagattggtgggagcacaat ccgaagtcaaattccagaaataaaaatggaaacaattcaaataagggaaattcaacttcgggtggtgttg gccgtggaacaacaacctcttcggtgggctcaatgacgggcaaaagcttcgggactggtcaagttaatca tgaaaccacttcaaaccagaatcagttgcaaagttttggtgtcaacacagccttatctgcgtcaacgtcc tctctcacatccgcagatcgcgtcgggataattggtttgagtaacgacgaatgggactcactagtgcaaa cacttgcaaacaggaaactcaactcaaaagaaaaatcaggtatatcttttcttgagtcatggattattga tacaggagcttctaatcacatgacaggcactcttgaatttttaatcgatgttcgcgatatggctcctgta ctcatcaaacttccagatggccgtttcaccatggctactaaacagggtcgagttgtttttggttctgcgc tgtgtattcaagatgtgttttttgttgatgggctgcaatgtcaccttatttcagtatcacagttaactag agaacgtagttgtgtatttcagattactgatcggctatgtctcattcaggaccgcatcaccaagaccctg attggagcaggtgaacaggagaatggtctttattttttgagaggagtaggagtagctgcagccgttcatt caatggattcatcatctatggaagtatggcattcgcggttgggacatccttcttctaaagctatggatat gttaaagtttttggattttagtactaagtttgatactaaggcgtgtgaagtttgtatccgcgctaaacaa acgagagagtcttttcctttgagttataataagacaaatgttgcttttgaactgattcactgcgatcttt gggtccttatcgtacatcttccatttgtggctctaaatactttctcaccatacttgacgactattcgaga gcagtctggatttacttgttacattccaaacaagaagctcctacacagcttaagaattttgttgctttag ttgaacgtcaattttctactaaggtgaaaacaattcgaagtgacaacggatgcgaattcatctgtctaag agattactttaatcaacacgggatcatacatgaaacatcctgcgttggcactccgcagcaaaatggccgt gttgaacgaaagcataggcatatattgaatgttgcccgaggtctacttttccaagctaatcttcccattg agttttggggttattgcgctttgacagccgggtacctcatcaatcgtactcctactgaaatacttggtgg aaagactcctttcgaactcatttataatcgacctccaccaatgaatcacattcgtgtttttgggtgtttg tgctatgttcacaaccaaaaacatggaggtgataaatttgcagccaggagtacttaggcaatctttgttg gttatccatttggcaaaaagggatggcgtgtttataaccttgaaaccagagcagttacggtctctcgaga tgtaatctttcaagaatctgttttaccttatacaattgagctcccaaatcaaccatctctctcgtcaagc ttaagtaatgaagaagaagctatcggtttgaccaacggttttgatgataatgaaccggaatcttctcact ctccaaccgaaccggatcctcctcaatctccaaccgaaccagagtcttctccgcctctaactgaaccgga ataacctcaacctcaaaccgatccggttgattctactacgcatacagaaccaaacccgcagacacatccg gttgattcaccttcatcgtctccaaaatctatatctcgtcctgaccaatcagaagatatcaatgaagcgt atgacaattctctggccgatcatgattctgccattgatgacgtcactgataattccacttcttcgtcttc aacggatacaaacagtaactctgaaccagaacaactcggctttggattcaggaaaaagaaacctccaaca aaactcgctgactatgtcacttctctccttcataatccacatccatcatcaacgccatatccaattgaca atttcatatccagctcacaattttcagataaatatcaacattttttgttggctattacttcaggagttga accaaagtcttatcaagaagcaattgaagatgaaaattggagatatgcagtcaaagatgaaattgatgcg ttggaagagaatggaacttggactgttgaaacccttcctgcaggtaaaaagcccattggttgcaaatggg tttttcgtctaaaattcaattctgatggtacgttagaacgacacaaagctcgtcttgttgttcttggaaa taatcaaaaagaaggtatcgactactccgaaacatttgcaccagtcgctaagatgatcaccgtgagaaca tttttgcaacaggctgcatctttagattgggaagttcatcaaatggatgttcacaacgcatttctacatg gtgatcttgatgaggaggtttacatgaaatttcctccgggttttcgcacagatgataacactaaagtctg tcgtcttcacaagtcgctttacggtctgaaacaagctcctcggtgttggttcgcgaaacttggttcagct ttgaaacaatatggttttgagcaagactattctgattattctctcttcgtcctcgcgaccggtattacaa ggcttcacgtgttggtctatgtcgatgacttgattattacgggaacctcgattcatattgttaacgaatt caaacattatttgagttcttgttttcatatgaagaatttgggacctctgcgctatttcttgggcatcgaa gtggctcgtagccccatagggatgtatctatgccaacgtaagtatgctttggatattagttcagaaacat gtctcatgggagtcaaaccaacaacgtttcctttggaacaaaatcacaagttgtctcttgcgcaagatgg ttctttttcagaccctacaaggtatagacgtcttgttggtcggcttatttacttgggcaacacacgaccc gagctgtcctatgtcattcatattttgtctcagtttatgaatgatccacaaaacgctcattggaacgctg ctctccgtgttgttcgctatgacaaaaacagtcctggtcagggcattctacttcgtgctaacacgccctt aacattgactgcttggtgtgactcggatcatggtgcttgtccgatcactagtcgttctcttaccggttgg tttatacagtttggcgactcaccgttatcttggaaaactaaaaagcatgatgttgtctctcgttcttcgg ctgaagctgaatatcgcgccatggcagataccgtgagtgaaattctttggctttgtgagttattaccaac tcttggcattaaggttaacacaccaatcactcttcactccgatagcttatccgccattatgcttgctgct atccggtgtttcatgctcgcaccaaacatgtcagacgtgatgttcatttcgttcgtgatgagattattcg tgtggtcatagcaaccaaacacgtttcgactacgactcaattggcagacattatgacgaaggctttggga cgtcaacaatttgaagattttcttgtcaagctgggtatttgtaacctccatactccagcttgagggggga 1