;ID ATCOPIA12I DNA ; ATH ; 4775 BP ;XX ;DE Internal region of ATCOPIA12 LTR-retrotransposon. ;XX ;AC AC006192 ;XX ;DT 12-APR-1999 (Rel. 3.2, Created) ;DT 12-APR-1999 (Rel. 3.2, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW ATCOPIA12LTR; ATCOPIA12I. ;XX ;OS thale cress ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Charophyta/Embryophyta group; ;OC Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; ;OC Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; ;OC Arabidopsis. ;XX ;RN [1] (bases 1 to 4775) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (March 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA12I is an internal region of ATCOPIA12 copia-like ;CC retrotransposon; it is flanked by 4% divergent LTRs, ;CC ATCOPIA12LTR, and bordered by a 5 bp-long target-site ;CC duplication. ORF encoding the copia-like polyprotein ;CC has several mutations which form false stop-codons and a frameshift. ;XX ;DR Positions 49192 53966 Accession No AC006192 GenBank (rel. 109.0) ;XX ;SQ Sequence 4775 BP; 1226 A; 1047 C; 1045 G; 1457 T; 0 other; ATCOPIA12I tggtacagagctaaagatctagcaaaaaaaaaaaaacatctaaattttttcttttttttatcgattgttt cgatctttgtttttcttgcgtgacaagaaaacatggcatcgatagatgatggttcatctacaacaaggat gacgtcttcctcgtctccggtggttacgatgggcgtttctcctttaccttatcaagttctgaaaatccag gaactacgatctcatctgtggtgttgaacggtgacaattacaacgaatggtcttcggagatgataaacgc tctccaagctaaacgcaaaatagggttcatcaacggatcgattccaaaaccttcagctaatgatcctaat tttgagaattggatggcagtgaattcaatgatagtgggttggattcgtacgtctatcgaacctaaggtga aatctacggtttctttcatctccgattcacaccaactttgggaagatttgaagcaacgtttctccgtggg aaacaaagtgagaattcatcaaatcaaagcacagatcgcacgatgtcaacaagacggccaatcagttctg gattattacggtcaactgtgcactctttgggaagaatatcaaacctacaaaccagtgactgtctgcaagt gtggattgtgcacatgtggtgctactcgtgaaccggcaaaagagagagaagaggagaagattcaccaatt tgttttgggtctcgatgaatcacggtttggaggtctcagcacccctctcatcgccgtggatcctttgccc actcttggtgaaatttattctcgagtagtgagagaagagcaacgattggcttctgtccaggttcgtgaac aacgacaagatgcagttggttttgtggctcgcaacgatcagagttccttcccatcctcacgacccgatat gcaaaacggaggccgtttagactcctctatcattaaatctcggtctgtgacttgctcacattgtggccgt gtgggtcatgaaaagaaggactgctggcagattgttggatttccagagtggtggactgatcgcaatggag gtggtcgtggatctggttcccgtggaagaggtggtcgtggatctggtcgaggaagagaccaatctgtgac agctcatgcaacaagctctaacccgaccagccttccagaattcacaccagctcagctgcaagtctcgcac aaatgattaaaggtcaacctaacaacagcagctccgacaaattatctggtaagacaaatcttggcaatgt aattcgtgatactggagcatctcatcatatgaccggaacactatctctgttgtctaacatggtctccata ccaccttgtgcggtgggttttgcggacggaagcaacacaatggctatgagtgtgggagtgttatctcttt ccaatgatgttgcgttggttgacgttctttatgtcccaaatttgacatgcactttaatctctgtttctaa aattgtgaaacaaataaagtgcattgcaacgtttactgatacgtattgcgttttacaggaccgtttcacg aggactttgattggaagcggtgaagagcgtggtggggtttattatcttacggatgtcgctacagcaaaaa tccatacggcaaaaatctcctcagatcaaactttgtggcatcaacgtttagggcatcccagtttctctgt tctttcatctttaccaaagttttctagtacttcaattcctgttggttctcgttcttgtgacgtatgcttt cgagctaaacaaacaagggaggtttttccccttagtattaataaatcaagcgagtgtttctctttgattc attgtgacgtttggggtccatatcgggttccttcatcttgtggtgcagtttattttttaacgatagttga tgacttttctcgagccgtttggacctatctactactagcaaaatctgaagtgcgctatgtactcatgaat tttatggcttacactgaaaaacaatttggcaagtccgtcaaaacagtgcagagtgacaatggcacataat ttatgtgtcttgctgcttactttcgtgaacatgggatcattcatcagacctcttgtgttgggactcctca acaaaatggtcgagtagaacgcaagcatagacatatccttaatgtggctagggctctattgtttcaagca agcatgccggtcaaattttggggtgaagcggtactaagtgctgcatatttgattaaccggactccttcat ctcttcacaaaggtatctcgccctatgaaattcttcacggttgtaaaccaaattatgatcagctccgtgt gtttggatcagcttgttacgttcaccgcgtcacccgtgataaagacaaatttgggaaacgaagtcgtttg tacgttttcgttggctacccttttgctcaaaaaggctggaaagtgtttgacattgacaagaatgagttta tcattactcgtgatgtcgtgtttcaggaagacgtcttcccgtatgatgctaaggatgatcattcttcact tgtacctccatctcctatagtttgcgattcagattggatgatcacactgtctctctcgaacagggggagt tctgtcatctttgactccaacactgaatttgatgccggtgagaacgtgatctctatttcaaccccgacgc ttccctcggtttttgaaccggaatctgaatctgcatctgtaccagtttctgaaccggattcggaatctgc atttgtaccagtttctgaaccagaatctgattctgcatctgtaccagtttctaaaccggattctgatcaa attgaaaaatcagtctctaaaccaattgtaccggttcatacgtctataccggtcgtaacagaaccttctc gtgttgctgactcaagcgctgcttctccgttgtctgtgacaaggactccagctaaaactaagctcaaatt tgttcccgtttccacaccagctcgggcaaccaatctgattgttcaatcagagacaccatcgcctcctcca cgtcaaggtaagcgaaaacttatacaatcagttcgtttgcaagactatgtcctctacaatactacatgtt ctccgataaacccccacgctctccccgattctactcaacagtcctcgtcaacagtcctaggtaattcgtt ggattccctaacaaattttatttctgacgatcaattctcgtcaggtcatcgtgcctatttgacagctata acgagtactgttgagcccaaacattttaaggaagctgttcatattaaagtttggaatgatgctatggtta aggaagttgactctcttgagattaacaaaacatgggatattgtcgatttaccagctggaaaagtggctat tgggagtcaatgggtctacaaaacaaaatacaatgccgatggttctattgaacgttacaaggcttgtctt gtcgttcttgggaacaaacaggtagcaggcgaggactacaatgaaacttttgctcctgttgtcaaaatga caacggtccgtactcttctttgccttgttgctgcaaatcaatgggaggtgttccaaatggatgtcaacaa tgcttttcttcacggcgatcttgaagaagaggtttacatgcagctgcctccgggatttcgtcattctcac cctaacaaagtggctcgacttcgcaaatcgttatatggtctgaagcaagctcctcgttgttggttcaaaa agctttccgattcattgctcaagtttgggtttgttcagtcctatgatgattactctctcttctcctacac taaagaaaacattgagctgcgtgtgttgatttatgttgatgatcttctcatttgtgggaatgacggttac atgatacaaaaattcaaggactatttgagtcgttgcttctctatgaaagatttgggcaagctcaaatatt ttcttggtattgaagttagtcggggtcctgatggaatttttttgtcacaacgcaagtatgcgtctgacat tgtctccgacaatgggcttcttggtactaaaccggctgcaactccgttggaacaaaatcataggcttgca agtgatgatggtccgctccttgctgatccaaagccatatcgtcgcttagttggccgtttgatttacctca ctcatacacgccctgatttgtgctattcagttcatgttttatctcagttcatgcagactcctagggaggc tcattgggacgcggcacttcgtgtggttcgtttcttacaaggtacttcgggacaaggaatattgctttct gcaaactctgatcttaccctcacagttttttgtgactcggattgggcgtcttgtcctttgactaggcgtt cccttagtgcatttgttgttttacttggcggttctcccatttcatggaaaaccaagaaacaagacacagt ttctcactcttccgcagaagcagaatatcgtgctatggccgctgcacttcgagagattaaatggcttcgt cggttgttaaaagaattaggcatcgaacagcatgcacccactcgtcttttctgcgatagcaaggctgcca ttcacattgctgctaatccggtgtttcacgaacgcaccaaacacatcgaatcagattgtcactcggttcg ggatgcggttcgtgatggtatcattgagacgcaacatgttcgaaccaccgaacagcttgctgacgtttta acgaaagcccttggtcgtctacattttcttgatttagtatccaagttgggtgttcggtctcctcccacgc caacgtgagggggag1