;ID ATCOPIA11I DNA ; ATH ; 4654 BP ;XX ;DE Internal region of ATCOPIA11 LTR-retrotransposon. ;XX ;AC AC002062 ;XX ;DT 12-APR-1999 (Rel. 3.2, Created) ;DT 12-APR-1999 (Rel. 3.2, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW ATCOPIA11LTR; ATCOPIA11I. ;XX ;OS thale cress ;XX ;OC Arabidopsis thaliana ;OC Eukaryotae; mitochondrial eukaryotes; Viridiplantae; ;OC Charophyta/Embryophyta group; Embryophyta; vascular plants; seed ;OC plants; Magnoliophyta; Magnoliopsida; Capparales; Brassicaceae; ;OC Arabidopsis. ;XX ;RN [1] (bases 1 to 4654) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (March 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATCOPIA11I is an internal region of a putative active ATCOPIA11 ;CC copia-like retrovirus flanked by 98% identical LTRs, ATCOPIA11LTR, ;CC and 5 bp-long target-site duplication. ;XX ;DR Positions 95877 91224 Accession No AC002062 GenBank (rel. 109.0) ;XX ;SQ Sequence 4654 BP; 1240 A; 969 C; 852 G; 1593 T; 0 other; ATCOPIA11I tggtatcagagcaaaatatctcgatctcagtcccgtaacaaacttctccgattagatctcaccggaatct caccggaatctcaccggagtttgttcatcttctcattgttcttcttctctcttctacacgttttcctttc gtctcctttgcgattcagtctctttggttagctgtttcgattctccataggtaaacgaaatggaaagagt gttcgtcggagtagttcaccggatcttcctgtcattgcttcaccgaagattcatgagcagtcttctggtt catcagcgagagctccaggatcctcgattcatgctgcgattcatcaaccagctcaatatagctcatcgcg tcactttgaggtatcggattctcctgataatagtcatagtccttatcatcttgttagctccgatcatcct ggtttagtcctagctccagaactgttagatggaaacaactatggaacctggattatagctatgactacta gcattgaagctaagaataagcttggatttgtggatggatctattccaaaacctgatgatgatgatcctta ttgcaaaatctggcgtcgttgtaacagtatggttaagtcttggcttctgaatagtgtatcaaaggagatc tatacaagcatcttgtattttcccacagccgctgcaatctggaaagatctctatactcgatttcacaaat ctagcctccctcgactttacaagctgcgtcaacagattcactctcttcgtcaaggcaatctggatttgtc atcgtatcatactcgtactcaaactctttgggaagaattgacgagtcttcaggctgttccacggactgta gaagatcttctgattgaaagagagactaatagagtcattgattttcttatgggactcaatgattgttatg atactgttaggagtcagattctcatgaagaaaactttgccatctttgtctgaggttttcaacatgattga tcaagatgaaactcaacgttctgcaaggatttctactactccaggaatgacttcatcagtgtttcctgtc tctaatcagtcttcacagtctgctcttaatggagatacttatcagaaaaaggagaggccagtttgttctt actgtagtcgacctggtcatgttgaagacacttgttacaagaaacatggttatccaacttctttcaagtc taagcagaaatttgtgaagccttctatctcggctaatgctgctattggttcagaagaggttgttaacaac acaagtgtttcgactggtgatttgacgacttctcaaattcaacaacttgtgtcctttctgagttccaaac ttcagcctcctagtactcccgttcaacctgaagtacactctatctcagtatcttccgatccttcttcttc ttccacagtgtgcccaatttccggtaacctttttccctctatcctttgttcttttgccggaattgctagg ccttatgtctgttctttagatagcaatgtcactgctattcattcttgggtcatagatacaggagcaacca atcatatttgccatgataaacattttttttcttcctttaaatatcttcatgatactactgtttccttgcc taatggaattcgtgtgagcattgttggtataggttcagttcacttgggtagacatctcatccttaatgat gttcttttcattccccagttcaaattcaatcttcttagtgtcagttctttaactaagagtatggggtgta gaatctggtttgatgaaacttcctgtgttcttcaggatgctacacgggaattaatggttggaatgggtaa acaagtagctaatctgtacattgtggatcttgattcattatctcatccaggtacagattcttctataact gttgcgtctgttactagtcatgatttgtggcataaaaggctaggtcatccttcagttcaaaagttacaac ccatgtcctctttgttatcttttccaaaacagaaaaataatacagattttcattgtcgggtctgtcatat atcaaaacaaaaacatctcccttttgtttctcataataataagagtagcagaccttttgatttaatccat atagacacttggggtcccttttctgttcaaactcatgatgggtatagatatttcttaaccattgtagatg attattctagagctacatgggtatatctcttaagaaataagtctgatgtccttactgttatccccacctt tgtcactatggtagaaaatcaatttgaaaccactattaaaggggttaggtctgacaatgctcccgaatta aatttcactcaattctatcattctaaaggcattgtgccatatcattcttgtcctgaaacaccccagcaaa actctgtggttgaaagaaaacatcagcatattctcaatgttgctagatcccttttctttcaatcacacat tcctatttcttattggggagactgtattcttactgcagtgtatctcattaatcgtcttcctgctcctatt ctagaggacaaatgtccttttgaggtgttaactaagactgttccaacttatgatcatattaaagtttttg gatgtctatgttatgcttccacctctcccaaagacagacataaattttctcctagagctaaagcttgtgc tttcattggttatccatctggatttaaaggatacaaactcttggatctagagacacattctataattgtt tctagacatgttgtgttccatgaagagctctttccctttcttggatcagatctttctcaggaagagcaaa atttctttcctgatctgaatcctacacctcctatgcaacgtcaatcatctgatcatgttaatccttctga ttcatcatcgtctgtagagattttgccttctgcaaatcctactaataatgtccctgaaccttctgttcaa acatcgcataggaaggccaaaaagcctgcttatcttcaagattactactgtcattcagtagtgtcttcaa ctccacatgaaattcgaaaattcctctcttatgataggattaatgatccttatcttacttttctcgcttg tcttgataaaactaaagaaccctctaactatactgaggcagagaaacttcaggtttggcgtgatgctatg ggtgctgaatttgatttcttagaaggtacacatacttgggaagtttgctctttgcctgcagataaaaggt gtattggttgtcgctggatctttaagatcaaatataattctgatggtagtgtggagagatacaaagctcg tttagttgctcaaggttatactcaaaaagaagggattgactacaatgagactttttctcctgttgcgaag cttaactctgtcaaacttcttcttggtgtggctgctcgttttaaattgtctcttacacaacttgatatat ctaacgcttttcttaatggagatctagatgaagaaatatatatgcgacttcctcaaggctatgcatcaag acagggggactccttacctccaaatgctgtttgtcggttgaagaagtccttatatggactcaaacaagcc tctcggcagtggtatctcaaattttcatctaccttacttggtctgggttttattcagtcttactgtgatc acacttgttttctgaaaatctctgatggcatctttctctgtgttctagtttatattgatgatatcatcat tgctagtaacaatgatgcagcagttgatattctaaagtcacagatgaaatcattcttcaagcttcgtgat ttgggtgaattgaaatattttcttggcttggagattgttagatcagataagggtattcatataagtcagc gaaaatatgctttggaccttcttgatgaaacaggtcagcttggttgtaagccatcaagcattcctatgga tccaagtatggtttttgctcatgatagtggtggtgactttgttgaagttggaccttatagacggctcatt ggacgattgatgtaccttaacatcacacgccctgacatcacttttgctgtcaataagctggctcaattct ccatggcacctcgtaaagctcatttacaagcagtttacaagattctgcaatacattaaaggtactattgg gcaaggtctcttctattctgcaacttctgaacttcagcttaaggtctatgcaaatgcagattataactcc tgtcgtgatagtcgtcgctctacatcaggttattgtatgtttcttggtgactctcttatttgctggaaat cacggaaacaagacgttgtttccaaatcatcagcagaagctgaatatagaagtctctctgttgcaactga tgaattggtttggcttacaaatttcttaaaggaattgcaggttccattgagtaagccaactcttctcttc tgtgacaatgaagctgcgattcacatagctaacaatcatgtcttccatgagcgcacgaagcacatagaat cagattgccacagtgtcagagaacgacttcttaaaggtttgtttgaactttatcatatcaatactgaatt gcaaattgcagatccgttcaccaagcctttatatccatctcacttccatcgtctaataagcaagatgggt ctactcaacatcttcgtctcatcttgagggggac1