Repbase Reports

2013, Volume 13, Issue 1
January 31, 2013
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 766

NeSL-3_CBre

A family of NeSL non-LTR retrotransposons - consensus.

Submitted:
22-Mar-2011
Accepted:
31-Jan-2013
Key Words:
NeSL; Non-LTR Retrotransposon; Transposable Element; NeSL-3_CBre
Source:
Caenorhabditis brenneri
Organism:
Caenorhabditis brenneri
Taxonomy:
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
[2] Authors:
Kojima,K.K. and Jurka,J.
Title:
NeSL, a spliced leader RNA gene-specific non-LTR retrotransposon family from nematodes.
Journal:
Repbase Reports 13(1), 766-766 (2013)
Abstract:
Several copies of this retrotransposon family are inserted into TE-1_CBre. This consensus is generated from 7 sequences with >97% identity. 5' terminus is uncertain. This sequence was derived from sequence data generated by Genome Sequencing Center at Washington University School of Medicine in St. Louis. The spliced leader exon-specific non-LTR retrotransposon family, NeSL, was reported from Caenorhabditis elegans [1]. Here we report NeSL elements from six other Caenorhabditis species: C. angaria, C. brenneri, C. briggsae, C. japonica, C. remanei and C. sp. 11 MAF-2010. The target sites are the same among the NeSL elements whose termini were determined, with the exception of NeSL-3_CBre, which targets a putative transposon (TE-1_CBre) including a part of spliced leader sequence.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Malik,H.S. and Eickbush,T.H.
    NeSL-1, an ancient lineage of site-specific non-LTR retrotransposons from Caenorhabditis elegans.
    Genetics 154(1), 193-203 (2000)

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