Repbase Reports |
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| 2010, Volume 10, Issue 9 |
| September 30, 2010 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 1213 |
Harbinger2-1_AAp |
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A family of autonomous Harbinger transposons - a consensus. |
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Submitted: 13-Aug-2010 |
Accepted: 30-Sep-2010 |
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Key Words: Harbinger; DNA transposon; Transposable Element; Interspersed repeat; Harbinger2; Harbinger2-1_AAp |
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Source: Ascosphaera apis |
Organism: Ascosphaera apis |
Taxonomy: Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomyceta; Pezizomycotina; Leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Harbinger2, a novel clade of Harbinger transposons in protozoan, fungi, choanoflagellate, and metazoans. |
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Journal: Repbase Reports 10(9), 1213-1213 (2010) |
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Abstract: Harbinger2-1_AAp belongs to a novel clade, Harbinger2, of Harbinger DNA transposons. This clade includes transposons present in protozoan (brown alga), fungi, choanoflagellate, and metazoans. Harbinger2-1_AAp is a consensus sequence of a family of autonomous Harbinger transposons that were active in the Ascosphaera apis genome recently. The consensus was derived from a few copies ~96% identical to it. The genome does not contain any full-size copies of Harbinger2-1_AAp. However, it contains ~10 full-size copies of nonautonomous elements that share termini with Harbinger2-1_AAp. Most of these copies are flanked by the ANT target site duplications. Therefore, the same should apply to Harbinger2-1_AAp. This transposon codes for the 370-aa TPase and 375 unclassified protein.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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