Repbase Reports

2010, Volume 10, Issue 5
May 31, 2010
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 776

IMPB_01

Consensus of repeated region of mouse chromosome 6 containing 60 tandem copies of a complex pattern.

Submitted:
21-May-2010
Accepted:
31-May-2010
Key Words:
Satellite; Simple Repeat; pattern of tandem duplications; (CT)n; (CA)n; low complexity insertions; conservative cores; IMPB_01
Source:
Mus musculus
Organism:
Mus musculus
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus
[1] Authors:
Tetuev,R.K. and Nazipova,N.N.
Title:
Consensus of repeated region of mouse chromosome 6 containing 60 tandem copies of a complex pattern.
Journal:
Repbase Reports 10(5), 776-776 (2010)
Abstract:
The region of mouse chromosome 6 (build 37.1, reference assembly C57BL/6J, NC_000072) located at 114,441,515-114,587,670 contains 60 tandem copies of a pattern with average lenght 2400 bps. The pattern consists of three conservative (98% similarity) parts separated by low complexity insertions of variable length. The general scheme of periodicity is as follows: (CA)n core1 (CT)m core2 (CT)k core3, where 12 <= n <= 40, 30 <= m <= 166, k = 12, and conservative parts core1, core2 and core3 are of the maximum lengths respectively 88, 663 and 1566.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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