Repbase Reports

2009, Volume 9, Issue 7
July 31, 2009
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 1529

I-1_AC

A family of I non-LTR retrotransposons from a sea slug - consensus sequence.

Submitted:
28-Jul-2009
Accepted:
31-Jul-2009
Key Words:
Ingi; Non-LTR Retrotransposon; Transposable Element; I group; I-1_AC
Source:
Aplysia californica
Organism:
Aplysia californica
Taxonomy:
Eukaryota; Metazoa; Mollusca; Gastropoda; Orthogastropoda; Apogastropoda; Heterobranchia; Euthyneura; Opisthobranchia; Anaspidea; Aplysioidea; Aplysiidae; Aplysia
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
New families of I non-LTR retrotransposons from animals.
Journal:
Repbase Reports 9(7), 1529-1529 (2009)
Abstract:
I-1_AC can be considered as a member of the Ingi clade in the I group. The consensus sequence was derived from multiple alignment of several copies ~97% identical to each other. The 3' terminus is composed of the (GA)n microsatellite. Target site duplications are not present.The consensus does not contain ORF1. The 5' terminus is precisely defined by 4 different copies of I-1_AC. Therefore, it is unlikely that the consensus is incomplete due to 5' truncations.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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