Repbase Reports |
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| 2009, Volume 9, Issue 3 |
| March 31, 2009 |
| Copyright © 2001-2009 - Genetic Information Research Institute, Mountain View, California |
| ISSN# 1534-830X |
| Page 714 |
hAT-10N1_VV |
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hAT-10N1_VV, non-autonomous DNA transposon - a consensus sequence. |
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Submitted: 05-Feb-2009 |
Accepted: 31-Mar-2009 |
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Key Words: hAT; DNA transposon; Transposable Element; Nonautonomous; TIR; MITE; mHatvine-10.1; hAT-10N1_VV |
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Source: Vitis vinifera |
Organism: Vitis vinifera |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; Vitales; Vitaceae; Vitis |
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| [1] |
Authors: Benjak,A., Boue,S., Forneck,A. and Casacuberta,J.M. |
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Title: Recent amplification and impact of MITEs on the genome of grapevine (Vitis vinifera L.). submitted. |
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Journal: Repbase Reports 9(3), 714-714 (2009) |
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Abstract: hAT-10N1_VV (mHatvine-10.1 in [1]) is a non-autonomous DNA transposon which is a deletion derivate of the autonomous hAT-10_VV. All copies contain a central region (positions 319-943) that is not related to hAT-10_VV but to a cellular non-genic region (82% identity). It seems that this region was captured and transduplicated by this element. Individual copies are >90% identical to the consensus sequence. TIRs are 11 bp-long (having 1 conserved mismatch) and flanked by 8 bp-long TSDs. There are approximately 20 highly conserved copies present in the genome which could place this family in the group of MITEs.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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